miRNA display CGI


Results 1 - 20 of 253 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29937 3' -62.9 NC_006273.1 + 17955 0.65 0.774621
Target:  5'- aUCUGCGCCauacgauccuCCGGCGCUgaGAaccuacgugcagCGCCa -3'
miRNA:   3'- -GGGCGCGGc---------GGCCGCGAgaCUa-----------GCGG- -5'
29937 3' -62.9 NC_006273.1 + 831 0.66 0.738704
Target:  5'- aCCaGCGCCggggacgggguguuGCgGGCGCUCgggGGUUGgCg -3'
miRNA:   3'- gGG-CGCGG--------------CGgCCGCGAGa--CUAGCgG- -5'
29937 3' -62.9 NC_006273.1 + 233007 0.66 0.732428
Target:  5'- aCUCGCGCC-CCaGCGC-CaGcgCGCCc -3'
miRNA:   3'- -GGGCGCGGcGGcCGCGaGaCuaGCGG- -5'
29937 3' -62.9 NC_006273.1 + 105443 0.66 0.731528
Target:  5'- -aCGCGggucucaCCGUCGGCGCUacaagGAgucggCGCCg -3'
miRNA:   3'- ggGCGC-------GGCGGCCGCGAga---CUa----GCGG- -5'
29937 3' -62.9 NC_006273.1 + 644 0.66 0.723399
Target:  5'- -gCGCGCUGCCGGUGCgu--GUgGCUc -3'
miRNA:   3'- ggGCGCGGCGGCCGCGagacUAgCGG- -5'
29937 3' -62.9 NC_006273.1 + 129930 0.66 0.723399
Target:  5'- aUCCGUGaCCGCCgGGCGCgcgCUG-UCcuaCCa -3'
miRNA:   3'- -GGGCGC-GGCGG-CCGCGa--GACuAGc--GG- -5'
29937 3' -62.9 NC_006273.1 + 197253 0.66 0.723399
Target:  5'- uUCUGCG-CGCgGGCGUgCUGGgcgCGCUg -3'
miRNA:   3'- -GGGCGCgGCGgCCGCGaGACUa--GCGG- -5'
29937 3' -62.9 NC_006273.1 + 233830 0.66 0.723399
Target:  5'- uCgCGCGCCGCUaGGaucaGCgugUUGuUCGCCa -3'
miRNA:   3'- -GgGCGCGGCGG-CCg---CGa--GACuAGCGG- -5'
29937 3' -62.9 NC_006273.1 + 48635 0.66 0.732428
Target:  5'- aCCUugaaaCGCCGUCGGCGCaCgcagcGGUCGCa -3'
miRNA:   3'- -GGGc----GCGGCGGCCGCGaGa----CUAGCGg -5'
29937 3' -62.9 NC_006273.1 + 137186 0.66 0.732428
Target:  5'- gCCGcCGCUGCCGcucaGCgagCUcGUCGCCa -3'
miRNA:   3'- gGGC-GCGGCGGCcg--CGa--GAcUAGCGG- -5'
29937 3' -62.9 NC_006273.1 + 32652 0.66 0.730628
Target:  5'- aCCUG-GCCGUCGGCGUcgcgUCgcaggcccgagcGGUUGCCg -3'
miRNA:   3'- -GGGCgCGGCGGCCGCG----AGa-----------CUAGCGG- -5'
29937 3' -62.9 NC_006273.1 + 133596 0.66 0.723399
Target:  5'- gCCgGCGUcaguCGCCGGCaccuggugGCUCUGcugcgUGCCu -3'
miRNA:   3'- -GGgCGCG----GCGGCCG--------CGAGACua---GCGG- -5'
29937 3' -62.9 NC_006273.1 + 111348 0.66 0.740491
Target:  5'- gCCGCGCCGCUGG-GUUCagcggcgUGAUC-Ca -3'
miRNA:   3'- gGGCGCGGCGGCCgCGAG-------ACUAGcGg -5'
29937 3' -62.9 NC_006273.1 + 188056 0.66 0.732428
Target:  5'- --aGCGCCGgCGGCGCg--GGucUCGUCu -3'
miRNA:   3'- gggCGCGGCgGCCGCGagaCU--AGCGG- -5'
29937 3' -62.9 NC_006273.1 + 216407 0.66 0.723399
Target:  5'- gUCCGUGCgGCCccaGGCGCUgCUG-UUGUUg -3'
miRNA:   3'- -GGGCGCGgCGG---CCGCGA-GACuAGCGG- -5'
29937 3' -62.9 NC_006273.1 + 233207 0.66 0.723399
Target:  5'- gUCgGCGCCGCCGcUGCUgccgCUGc-CGCCg -3'
miRNA:   3'- -GGgCGCGGCGGCcGCGA----GACuaGCGG- -5'
29937 3' -62.9 NC_006273.1 + 131259 0.66 0.732428
Target:  5'- gCCGCGUCGggucUCGGCGUgc-GcgCGCCg -3'
miRNA:   3'- gGGCGCGGC----GGCCGCGagaCuaGCGG- -5'
29937 3' -62.9 NC_006273.1 + 56805 0.66 0.723399
Target:  5'- aCCCGgGCCGUCGuCGUgCaGAcCGCCg -3'
miRNA:   3'- -GGGCgCGGCGGCcGCGaGaCUaGCGG- -5'
29937 3' -62.9 NC_006273.1 + 196271 0.66 0.732428
Target:  5'- gCUGuCGCCGCgGGaCGCgugGAUCGUg -3'
miRNA:   3'- gGGC-GCGGCGgCC-GCGagaCUAGCGg -5'
29937 3' -62.9 NC_006273.1 + 111914 0.66 0.732428
Target:  5'- gCCUGCGCCaGCUcaagGGCGCcCUGGUgGaCUu -3'
miRNA:   3'- -GGGCGCGG-CGG----CCGCGaGACUAgC-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.