miRNA display CGI


Results 1 - 20 of 253 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29937 3' -62.9 NC_006273.1 + 47338 0.95 0.012656
Target:  5'- aCCCGCGCCGCCGGCGCUgUcAUCGCCc -3'
miRNA:   3'- -GGGCGCGGCGGCCGCGAgAcUAGCGG- -5'
29937 3' -62.9 NC_006273.1 + 50328 0.81 0.121538
Target:  5'- aCCaCGUCGCCGGCGCcggugUUGGUCGCCg -3'
miRNA:   3'- gGGcGCGGCGGCCGCGa----GACUAGCGG- -5'
29937 3' -62.9 NC_006273.1 + 62050 0.78 0.181167
Target:  5'- aCCGCGgCGgCGGCGgaCuUGAUCGCCa -3'
miRNA:   3'- gGGCGCgGCgGCCGCgaG-ACUAGCGG- -5'
29937 3' -62.9 NC_006273.1 + 171304 0.78 0.185382
Target:  5'- gCUCGCcCCGCCGcUGCUCUGAUgGCCg -3'
miRNA:   3'- -GGGCGcGGCGGCcGCGAGACUAgCGG- -5'
29937 3' -62.9 NC_006273.1 + 45248 0.78 0.185382
Target:  5'- gCCCGUGCCGcCCGGCGg-CUGcucgCGCCg -3'
miRNA:   3'- -GGGCGCGGC-GGCCGCgaGACua--GCGG- -5'
29937 3' -62.9 NC_006273.1 + 138035 0.77 0.212524
Target:  5'- --gGCGgCGCCGGCGC-CUGGUUGCUg -3'
miRNA:   3'- gggCGCgGCGGCCGCGaGACUAGCGG- -5'
29937 3' -62.9 NC_006273.1 + 196549 0.76 0.24463
Target:  5'- cCCCGCGCgCgacgcugcugccucaGCCGGCGCUCcgacagacguugcUGcgCGCCg -3'
miRNA:   3'- -GGGCGCG-G---------------CGGCCGCGAG-------------ACuaGCGG- -5'
29937 3' -62.9 NC_006273.1 + 1656 0.76 0.24463
Target:  5'- cCCCGCGCgCgacgcugcugccucaGCCGGCGCUCcgacagacguugcUGcgCGCCg -3'
miRNA:   3'- -GGGCGCG-G---------------CGGCCGCGAG-------------ACuaGCGG- -5'
29937 3' -62.9 NC_006273.1 + 90353 0.76 0.248436
Target:  5'- gCCGUaCCGCCGGCGCUggGAUgccgCGCCg -3'
miRNA:   3'- gGGCGcGGCGGCCGCGAgaCUA----GCGG- -5'
29937 3' -62.9 NC_006273.1 + 72355 0.76 0.248436
Target:  5'- gCCCGCGCUGUgGGCGCUgCUGgGUCGa- -3'
miRNA:   3'- -GGGCGCGGCGgCCGCGA-GAC-UAGCgg -5'
29937 3' -62.9 NC_006273.1 + 183761 0.75 0.25958
Target:  5'- gUCCGCGCCGCCGa-GC-CUGccGUCGCCc -3'
miRNA:   3'- -GGGCGCGGCGGCcgCGaGAC--UAGCGG- -5'
29937 3' -62.9 NC_006273.1 + 21218 0.75 0.295459
Target:  5'- gCCgGCuGCCGCCGcuguggcuGcCGCUgCUGAUCGCCu -3'
miRNA:   3'- -GGgCG-CGGCGGC--------C-GCGA-GACUAGCGG- -5'
29937 3' -62.9 NC_006273.1 + 206502 0.74 0.308248
Target:  5'- uCCgGCGUCGCUGGCGCU-UGGUgCGCg -3'
miRNA:   3'- -GGgCGCGGCGGCCGCGAgACUA-GCGg -5'
29937 3' -62.9 NC_006273.1 + 197980 0.74 0.314799
Target:  5'- -gCGCGCC-CCGGCGCUCa-GUCGCg -3'
miRNA:   3'- ggGCGCGGcGGCCGCGAGacUAGCGg -5'
29937 3' -62.9 NC_006273.1 + 131050 0.74 0.33508
Target:  5'- gCCgCGCGCCaGCCcaucccccucucGGCGCUC--AUCGCCa -3'
miRNA:   3'- -GG-GCGCGG-CGG------------CCGCGAGacUAGCGG- -5'
29937 3' -62.9 NC_006273.1 + 115127 0.74 0.33508
Target:  5'- gCCGaaGCCGCCaGCggaaGCUUUGGUCGCCu -3'
miRNA:   3'- gGGCg-CGGCGGcCG----CGAGACUAGCGG- -5'
29937 3' -62.9 NC_006273.1 + 202366 0.74 0.33508
Target:  5'- -aUGCGCCGCCaGCGC---GGUCGCCa -3'
miRNA:   3'- ggGCGCGGCGGcCGCGagaCUAGCGG- -5'
29937 3' -62.9 NC_006273.1 + 101898 0.73 0.349123
Target:  5'- gCCCGgGCCGCCGccagcguccGCGC-CUGcaCGCCg -3'
miRNA:   3'- -GGGCgCGGCGGC---------CGCGaGACuaGCGG- -5'
29937 3' -62.9 NC_006273.1 + 233161 0.73 0.349123
Target:  5'- cCCCGaCGCCGCCGGaccCGC-C--AUCGCCg -3'
miRNA:   3'- -GGGC-GCGGCGGCC---GCGaGacUAGCGG- -5'
29937 3' -62.9 NC_006273.1 + 38268 0.73 0.349123
Target:  5'- cCCCGaCGCCGCCGGaccCGC-C--AUCGCCg -3'
miRNA:   3'- -GGGC-GCGGCGGCC---GCGaGacUAGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.