miRNA display CGI


Results 21 - 40 of 253 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29937 3' -62.9 NC_006273.1 + 35974 0.66 0.759045
Target:  5'- gCUCGCGCgGCUucgGGCGCUUgugGGUCcagGCa -3'
miRNA:   3'- -GGGCGCGgCGG---CCGCGAGa--CUAG---CGg -5'
29937 3' -62.9 NC_006273.1 + 57863 0.66 0.759045
Target:  5'- aCCaCGUucaacGCCGCCGGUug-CUGG-CGCCa -3'
miRNA:   3'- -GG-GCG-----CGGCGGCCGcgaGACUaGCGG- -5'
29937 3' -62.9 NC_006273.1 + 40702 0.66 0.759045
Target:  5'- -gCGUGCUGuguCCGGCGCUUUGugcgcacUGCCg -3'
miRNA:   3'- ggGCGCGGC---GGCCGCGAGACua-----GCGG- -5'
29937 3' -62.9 NC_006273.1 + 60300 0.66 0.758171
Target:  5'- -gCGUGCCGUcgggagaCGGCGaCUCgGGaCGCCa -3'
miRNA:   3'- ggGCGCGGCG-------GCCGC-GAGaCUaGCGG- -5'
29937 3' -62.9 NC_006273.1 + 213278 0.66 0.755541
Target:  5'- uCCCGCggcaguuuccuccGCCGCCucguuuuccucuucGGUGUUCaGA-CGCCg -3'
miRNA:   3'- -GGGCG-------------CGGCGG--------------CCGCGAGaCUaGCGG- -5'
29937 3' -62.9 NC_006273.1 + 46331 0.66 0.753783
Target:  5'- gCCGCcuacGCCGCCGGUccgggcccccaccacGCggCUG-UCGUCg -3'
miRNA:   3'- gGGCG----CGGCGGCCG---------------CGa-GACuAGCGG- -5'
29937 3' -62.9 NC_006273.1 + 94610 0.66 0.751141
Target:  5'- aCCuCGUCGCCGGCGUcaucgacccggccugCUGAcgCGCUc -3'
miRNA:   3'- gGGcGCGGCGGCCGCGa--------------GACUa-GCGG- -5'
29937 3' -62.9 NC_006273.1 + 162009 0.66 0.750258
Target:  5'- gCCCGCG-CGCUuuGCGaCUCUGGgccCGCUg -3'
miRNA:   3'- -GGGCGCgGCGGc-CGC-GAGACUa--GCGG- -5'
29937 3' -62.9 NC_006273.1 + 105860 0.66 0.750258
Target:  5'- gCgGCGCagCGCCGGCcauuCUCcgGGUCGCg -3'
miRNA:   3'- gGgCGCG--GCGGCCGc---GAGa-CUAGCGg -5'
29937 3' -62.9 NC_006273.1 + 174463 0.66 0.750258
Target:  5'- gCCCGCGagCGCUGuaGCUUUGucaaccGUCGCa -3'
miRNA:   3'- -GGGCGCg-GCGGCcgCGAGAC------UAGCGg -5'
29937 3' -62.9 NC_006273.1 + 157726 0.66 0.750258
Target:  5'- uCgCGCGCCGCCGuGaGCaUCUGcgugaugcaGUCGCa -3'
miRNA:   3'- -GgGCGCGGCGGC-CgCG-AGAC---------UAGCGg -5'
29937 3' -62.9 NC_006273.1 + 17173 0.66 0.750258
Target:  5'- gCCGCGCCauGCCGGuCGUcCgccGUCgGCCg -3'
miRNA:   3'- gGGCGCGG--CGGCC-GCGaGac-UAG-CGG- -5'
29937 3' -62.9 NC_006273.1 + 112289 0.66 0.750258
Target:  5'- aCCUGCGaCCGCaccgaGGCGCcagCcGAcccaguggcguuUCGCCu -3'
miRNA:   3'- -GGGCGC-GGCGg----CCGCGa--GaCU------------AGCGG- -5'
29937 3' -62.9 NC_006273.1 + 64515 0.66 0.750258
Target:  5'- aCCCGC-CCGCCGGCucgacaucgGUguccCUGc-CGCCg -3'
miRNA:   3'- -GGGCGcGGCGGCCG---------CGa---GACuaGCGG- -5'
29937 3' -62.9 NC_006273.1 + 190473 0.66 0.750258
Target:  5'- gUUGCGCCGgaCGGCGUUgUGG-CGCg -3'
miRNA:   3'- gGGCGCGGCg-GCCGCGAgACUaGCGg -5'
29937 3' -62.9 NC_006273.1 + 158663 0.66 0.750258
Target:  5'- -aCGCggauGuuGCCGGCGCaugCgGGUCGCa -3'
miRNA:   3'- ggGCG----CggCGGCCGCGa--GaCUAGCGg -5'
29937 3' -62.9 NC_006273.1 + 77152 0.66 0.750258
Target:  5'- aCCGcCGUCGCCGGC-CgacGcgCGCCc -3'
miRNA:   3'- gGGC-GCGGCGGCCGcGagaCuaGCGG- -5'
29937 3' -62.9 NC_006273.1 + 148681 0.66 0.741383
Target:  5'- gCgCGCaGCUGCUGGaGCUCcucGUCGCCu -3'
miRNA:   3'- -GgGCG-CGGCGGCCgCGAGac-UAGCGG- -5'
29937 3' -62.9 NC_006273.1 + 58351 0.66 0.741383
Target:  5'- uCCCaGCGCgCGCUGGCGa--UGGagaGCCg -3'
miRNA:   3'- -GGG-CGCG-GCGGCCGCgagACUag-CGG- -5'
29937 3' -62.9 NC_006273.1 + 18528 0.66 0.741383
Target:  5'- -gCGCGCCuGCCGGCcUUUUGAccacaUGCCg -3'
miRNA:   3'- ggGCGCGG-CGGCCGcGAGACUa----GCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.