miRNA display CGI


Results 1 - 20 of 253 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29937 3' -62.9 NC_006273.1 + 8 0.66 0.767739
Target:  5'- uCCCGCaCCGgCGGCGgUCgGGgugUGUCg -3'
miRNA:   3'- -GGGCGcGGCgGCCGCgAGaCUa--GCGG- -5'
29937 3' -62.9 NC_006273.1 + 426 0.69 0.565346
Target:  5'- -gCGCGCCGCaCGuCGCUUUuauUCGCCg -3'
miRNA:   3'- ggGCGCGGCG-GCcGCGAGAcu-AGCGG- -5'
29937 3' -62.9 NC_006273.1 + 550 0.72 0.393718
Target:  5'- cCCCGacCGCCGCCGGUGCgggacagggCUaagCGCCu -3'
miRNA:   3'- -GGGC--GCGGCGGCCGCGa--------GAcuaGCGG- -5'
29937 3' -62.9 NC_006273.1 + 644 0.66 0.723399
Target:  5'- -gCGCGCUGCCGGUGCgu--GUgGCUc -3'
miRNA:   3'- ggGCGCGGCGGCCGCGagacUAgCGG- -5'
29937 3' -62.9 NC_006273.1 + 764 0.66 0.759045
Target:  5'- -gCGUGCUGuguCCGGCGCUUUGugcgcacUGCCg -3'
miRNA:   3'- ggGCGCGGC---GGCCGCGAGACua-----GCGG- -5'
29937 3' -62.9 NC_006273.1 + 831 0.66 0.738704
Target:  5'- aCCaGCGCCggggacgggguguuGCgGGCGCUCgggGGUUGgCg -3'
miRNA:   3'- gGG-CGCGG--------------CGgCCGCGAGa--CUAGCgG- -5'
29937 3' -62.9 NC_006273.1 + 1076 0.67 0.668093
Target:  5'- cCCCGCggGCCGCCgGGCGCcccUCcGAguagCGgCa -3'
miRNA:   3'- -GGGCG--CGGCGG-CCGCG---AGaCUa---GCgG- -5'
29937 3' -62.9 NC_006273.1 + 1378 0.66 0.732428
Target:  5'- gCUGuCGCCGCgGGaCGCgugGAUCGUg -3'
miRNA:   3'- gGGC-GCGGCGgCC-GCGagaCUAGCGg -5'
29937 3' -62.9 NC_006273.1 + 1656 0.76 0.24463
Target:  5'- cCCCGCGCgCgacgcugcugccucaGCCGGCGCUCcgacagacguugcUGcgCGCCg -3'
miRNA:   3'- -GGGCGCG-G---------------CGGCCGCGAG-------------ACuaGCGG- -5'
29937 3' -62.9 NC_006273.1 + 1792 0.66 0.741383
Target:  5'- aCUGCaGCCGauGGUGCUgCUGggCGCg -3'
miRNA:   3'- gGGCG-CGGCggCCGCGA-GACuaGCGg -5'
29937 3' -62.9 NC_006273.1 + 2251 0.71 0.486995
Target:  5'- aCCGUGCCGCgcgccaugcugguggUGGUGCUggacgagCUGggCGCCg -3'
miRNA:   3'- gGGCGCGGCG---------------GCCGCGA-------GACuaGCGG- -5'
29937 3' -62.9 NC_006273.1 + 2360 0.66 0.723399
Target:  5'- uUCUGCG-CGCgGGCGUgCUGGgcgCGCUg -3'
miRNA:   3'- -GGGCGCgGCGgCCGCGaGACUa--GCGG- -5'
29937 3' -62.9 NC_006273.1 + 2495 0.72 0.417357
Target:  5'- aCCCGCG-CGCC-GCGCUgUGggCGCg -3'
miRNA:   3'- -GGGCGCgGCGGcCGCGAgACuaGCGg -5'
29937 3' -62.9 NC_006273.1 + 4921 0.71 0.441842
Target:  5'- uUCGC-CCGCCGGgGCUuCUGGagaaCGCCg -3'
miRNA:   3'- gGGCGcGGCGGCCgCGA-GACUa---GCGG- -5'
29937 3' -62.9 NC_006273.1 + 4961 0.66 0.762534
Target:  5'- gCCaaGUGCCGaCGGCGCUUUGGcuuuauguucaacguUCaGCCa -3'
miRNA:   3'- gGG--CGCGGCgGCCGCGAGACU---------------AG-CGG- -5'
29937 3' -62.9 NC_006273.1 + 4982 0.66 0.762534
Target:  5'- cCCUGCGUuuuauaugguagcucUGCCGaGCGCgggCUGA-CGCg -3'
miRNA:   3'- -GGGCGCG---------------GCGGC-CGCGa--GACUaGCGg -5'
29937 3' -62.9 NC_006273.1 + 8346 0.69 0.565346
Target:  5'- gCCGUGCCGCCGGUugGUggCUGG-CGgCa -3'
miRNA:   3'- gGGCGCGGCGGCCG--CGa-GACUaGCgG- -5'
29937 3' -62.9 NC_006273.1 + 13595 0.7 0.519771
Target:  5'- gCCCGgGCCGCC-GUGCUg-GAggGCCg -3'
miRNA:   3'- -GGGCgCGGCGGcCGCGAgaCUagCGG- -5'
29937 3' -62.9 NC_006273.1 + 14370 0.71 0.45861
Target:  5'- cCCCGCGCUGCCuguGGCGgCUgagGAUC-CCa -3'
miRNA:   3'- -GGGCGCGGCGG---CCGC-GAga-CUAGcGG- -5'
29937 3' -62.9 NC_006273.1 + 16641 0.66 0.767739
Target:  5'- aCUGCguuGCCGCUGGUaCcugCUGggCGCCg -3'
miRNA:   3'- gGGCG---CGGCGGCCGcGa--GACuaGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.