miRNA display CGI


Results 1 - 20 of 253 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29937 3' -62.9 NC_006273.1 + 145076 0.71 0.466265
Target:  5'- gCCGCgggcgacGCCGCUGGCgGCggcgCUGAUCaCCa -3'
miRNA:   3'- gGGCG-------CGGCGGCCG-CGa---GACUAGcGG- -5'
29937 3' -62.9 NC_006273.1 + 95058 0.72 0.393718
Target:  5'- gCCuaGCCGCCGGCuCUC-GGUcCGCCu -3'
miRNA:   3'- gGGcgCGGCGGCCGcGAGaCUA-GCGG- -5'
29937 3' -62.9 NC_006273.1 + 114556 0.72 0.393718
Target:  5'- aCgCGCGaaaaCGCCggcguGGCGCUCUacgcGGUCGCCu -3'
miRNA:   3'- -GgGCGCg---GCGG-----CCGCGAGA----CUAGCGG- -5'
29937 3' -62.9 NC_006273.1 + 118283 0.72 0.393718
Target:  5'- -gCGCGCUcagGCCGGCGUggUGAaCGCCa -3'
miRNA:   3'- ggGCGCGG---CGGCCGCGagACUaGCGG- -5'
29937 3' -62.9 NC_006273.1 + 550 0.72 0.393718
Target:  5'- cCCCGacCGCCGCCGGUGCgggacagggCUaagCGCCu -3'
miRNA:   3'- -GGGC--GCGGCGGCCGCGa--------GAcuaGCGG- -5'
29937 3' -62.9 NC_006273.1 + 197388 0.72 0.417357
Target:  5'- aCCCGCG-CGCC-GCGCUgUGggCGCg -3'
miRNA:   3'- -GGGCGCgGCGGcCGCGAgACuaGCGg -5'
29937 3' -62.9 NC_006273.1 + 103538 0.71 0.439357
Target:  5'- gCCGcCGuaGCCGGCcagccccaggccguGCgggCUGGUCGCCg -3'
miRNA:   3'- gGGC-GCggCGGCCG--------------CGa--GACUAGCGG- -5'
29937 3' -62.9 NC_006273.1 + 4921 0.71 0.441842
Target:  5'- uUCGC-CCGCCGGgGCUuCUGGagaaCGCCg -3'
miRNA:   3'- gGGCGcGGCGGCCgCGA-GACUa---GCGG- -5'
29937 3' -62.9 NC_006273.1 + 229111 0.71 0.450183
Target:  5'- aCUGCGCCacaguacCCGGCGCUggUUGuuUCGCCg -3'
miRNA:   3'- gGGCGCGGc------GGCCGCGA--GACu-AGCGG- -5'
29937 3' -62.9 NC_006273.1 + 82539 0.72 0.386033
Target:  5'- uCCCGCGgCGCCcaGGcCGCUCaugaGGUCGUCc -3'
miRNA:   3'- -GGGCGCgGCGG--CC-GCGAGa---CUAGCGG- -5'
29937 3' -62.9 NC_006273.1 + 135131 0.73 0.378448
Target:  5'- gCCCGCGCCGCuUGGaa--CUGGUCGCg -3'
miRNA:   3'- -GGGCGCGGCG-GCCgcgaGACUAGCGg -5'
29937 3' -62.9 NC_006273.1 + 129547 0.73 0.370963
Target:  5'- gCCGCGCCGCCucGGCugugacGCUCUaauaGUCGUCg -3'
miRNA:   3'- gGGCGCGGCGG--CCG------CGAGAc---UAGCGG- -5'
29937 3' -62.9 NC_006273.1 + 171304 0.78 0.185382
Target:  5'- gCUCGCcCCGCCGcUGCUCUGAUgGCCg -3'
miRNA:   3'- -GGGCGcGGCGGCcGCGAGACUAgCGG- -5'
29937 3' -62.9 NC_006273.1 + 45248 0.78 0.185382
Target:  5'- gCCCGUGCCGcCCGGCGg-CUGcucgCGCCg -3'
miRNA:   3'- -GGGCGCGGC-GGCCGCgaGACua--GCGG- -5'
29937 3' -62.9 NC_006273.1 + 138035 0.77 0.212524
Target:  5'- --gGCGgCGCCGGCGC-CUGGUUGCUg -3'
miRNA:   3'- gggCGCgGCGGCCGCGaGACUAGCGG- -5'
29937 3' -62.9 NC_006273.1 + 196549 0.76 0.24463
Target:  5'- cCCCGCGCgCgacgcugcugccucaGCCGGCGCUCcgacagacguugcUGcgCGCCg -3'
miRNA:   3'- -GGGCGCG-G---------------CGGCCGCGAG-------------ACuaGCGG- -5'
29937 3' -62.9 NC_006273.1 + 90353 0.76 0.248436
Target:  5'- gCCGUaCCGCCGGCGCUggGAUgccgCGCCg -3'
miRNA:   3'- gGGCGcGGCGGCCGCGAgaCUA----GCGG- -5'
29937 3' -62.9 NC_006273.1 + 21218 0.75 0.295459
Target:  5'- gCCgGCuGCCGCCGcuguggcuGcCGCUgCUGAUCGCCu -3'
miRNA:   3'- -GGgCG-CGGCGGC--------C-GCGA-GACUAGCGG- -5'
29937 3' -62.9 NC_006273.1 + 233161 0.73 0.349123
Target:  5'- cCCCGaCGCCGCCGGaccCGC-C--AUCGCCg -3'
miRNA:   3'- -GGGC-GCGGCGGCC---GCGaGacUAGCGG- -5'
29937 3' -62.9 NC_006273.1 + 63181 0.73 0.370963
Target:  5'- gCgGCGCgGCCGGCGCggcc-UCGCCu -3'
miRNA:   3'- gGgCGCGgCGGCCGCGagacuAGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.