miRNA display CGI


Results 1 - 20 of 251 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29937 5' -53.1 NC_006273.1 + 45561 0.66 0.993963
Target:  5'- cGCGACGAguugaccaaacgcuGCGGCGAaaaauCGGCGCuGGg- -3'
miRNA:   3'- -CGCUGCUau------------CGUUGCU-----GCUGCG-CCaa -5'
29937 5' -53.1 NC_006273.1 + 203094 0.66 0.993877
Target:  5'- cGCGGCGGUcGCGACGGUGACGg---- -3'
miRNA:   3'- -CGCUGCUAuCGUUGCUGCUGCgccaa -5'
29937 5' -53.1 NC_006273.1 + 101421 0.66 0.993877
Target:  5'- gGUGAUGAU-GCGagGCGGCGcCGaCGGUa -3'
miRNA:   3'- -CGCUGCUAuCGU--UGCUGCuGC-GCCAa -5'
29937 5' -53.1 NC_006273.1 + 147975 0.66 0.993877
Target:  5'- -aGGCGGaggAGcCGGCGGCGGCgGUGGUg -3'
miRNA:   3'- cgCUGCUa--UC-GUUGCUGCUG-CGCCAa -5'
29937 5' -53.1 NC_006273.1 + 64261 0.66 0.993877
Target:  5'- -gGGCGuu-GCGGCGGCGGCcgaaGCGGa- -3'
miRNA:   3'- cgCUGCuauCGUUGCUGCUG----CGCCaa -5'
29937 5' -53.1 NC_006273.1 + 145082 0.66 0.993791
Target:  5'- gGCGACGccgcUGGCGGCGGCGcugaucaccaccuGCGgGGc- -3'
miRNA:   3'- -CGCUGCu---AUCGUUGCUGC-------------UGCgCCaa -5'
29937 5' -53.1 NC_006273.1 + 159804 0.66 0.992972
Target:  5'- cGCGuguCGAUGGcCAGCGGCG-CGCa--- -3'
miRNA:   3'- -CGCu--GCUAUC-GUUGCUGCuGCGccaa -5'
29937 5' -53.1 NC_006273.1 + 44152 0.66 0.992972
Target:  5'- aCGACGggAGCGAacggGAUGGCGCuGGa- -3'
miRNA:   3'- cGCUGCuaUCGUUg---CUGCUGCG-CCaa -5'
29937 5' -53.1 NC_006273.1 + 62714 0.66 0.992972
Target:  5'- cGCGACGcguGCAACGGCuacuagaucuGACGCagauGGUa -3'
miRNA:   3'- -CGCUGCuauCGUUGCUG----------CUGCG----CCAa -5'
29937 5' -53.1 NC_006273.1 + 130797 0.66 0.992972
Target:  5'- uCGACGGUGGUuuCGGCGAa-CGGa- -3'
miRNA:   3'- cGCUGCUAUCGuuGCUGCUgcGCCaa -5'
29937 5' -53.1 NC_006273.1 + 1585 0.66 0.992972
Target:  5'- -nGACGAgUGGUuuCGgcACGGCGCGGg- -3'
miRNA:   3'- cgCUGCU-AUCGuuGC--UGCUGCGCCaa -5'
29937 5' -53.1 NC_006273.1 + 196478 0.66 0.992972
Target:  5'- -nGACGAgUGGUuuCGgcACGGCGCGGg- -3'
miRNA:   3'- cgCUGCU-AUCGuuGC--UGCUGCGCCaa -5'
29937 5' -53.1 NC_006273.1 + 139274 0.66 0.992972
Target:  5'- aGCGcccucuaGGUAGCAucacggaacagGCGGCGAcCGCGGa- -3'
miRNA:   3'- -CGCug-----CUAUCGU-----------UGCUGCU-GCGCCaa -5'
29937 5' -53.1 NC_006273.1 + 34394 0.66 0.992972
Target:  5'- uUGACGugGGCGGCGAUGAgaacgucaGCGGUg -3'
miRNA:   3'- cGCUGCuaUCGUUGCUGCUg-------CGCCAa -5'
29937 5' -53.1 NC_006273.1 + 73932 0.66 0.992681
Target:  5'- gGUGACG-UGGUuccggaccgccaacGACGuCGACGCGGc- -3'
miRNA:   3'- -CGCUGCuAUCG--------------UUGCuGCUGCGCCaa -5'
29937 5' -53.1 NC_006273.1 + 65516 0.66 0.992581
Target:  5'- --aGCGAUAGCGGCGGCcucuucuucgucCGCGGUa -3'
miRNA:   3'- cgcUGCUAUCGUUGCUGcu----------GCGCCAa -5'
29937 5' -53.1 NC_006273.1 + 163734 0.66 0.991963
Target:  5'- cGCGGCGGUuuAGCAGCGACGuccuccuCGUc--- -3'
miRNA:   3'- -CGCUGCUA--UCGUUGCUGCu------GCGccaa -5'
29937 5' -53.1 NC_006273.1 + 120772 0.66 0.991963
Target:  5'- aGCGGCGGUGGgcaCAGCGGCuACGaUGGa- -3'
miRNA:   3'- -CGCUGCUAUC---GUUGCUGcUGC-GCCaa -5'
29937 5' -53.1 NC_006273.1 + 28564 0.66 0.991963
Target:  5'- cGCGugGAUGuGCAugcagccggccaGCGcucuaaGCGAgGCGGUg -3'
miRNA:   3'- -CGCugCUAU-CGU------------UGC------UGCUgCGCCAa -5'
29937 5' -53.1 NC_006273.1 + 69702 0.66 0.991963
Target:  5'- cCGcCGAUcgcguaGGCAGCGGCGAagGUGGUg -3'
miRNA:   3'- cGCuGCUA------UCGUUGCUGCUg-CGCCAa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.