Results 1 - 20 of 130 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
29938 | 3' | -54.8 | NC_006273.1 | + | 217296 | 0.66 | 0.981095 |
Target: 5'- aGCAGAGA--UAGuCGGCG-GCCAg-- -3' miRNA: 3'- -CGUCUCUucGUCuGCCGCuCGGUacc -5' |
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29938 | 3' | -54.8 | NC_006273.1 | + | 41190 | 0.66 | 0.981095 |
Target: 5'- gGCGGGGAcGgGGACGG-GGGCCu--- -3' miRNA: 3'- -CGUCUCUuCgUCUGCCgCUCGGuacc -5' |
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29938 | 3' | -54.8 | NC_006273.1 | + | 65834 | 0.66 | 0.981095 |
Target: 5'- gGCGGcGcAGCAGGCGGUacgcgccuaucuGGGCCAuccaagaaacUGGa -3' miRNA: 3'- -CGUCuCuUCGUCUGCCG------------CUCGGU----------ACC- -5' |
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29938 | 3' | -54.8 | NC_006273.1 | + | 1252 | 0.66 | 0.981095 |
Target: 5'- gGCGGGGAcGgGGACGG-GGGCCu--- -3' miRNA: 3'- -CGUCUCUuCgUCUGCCgCUCGGuacc -5' |
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29938 | 3' | -54.8 | NC_006273.1 | + | 42739 | 0.66 | 0.978971 |
Target: 5'- gGCGacGAGccGCAuagcGACGGCGAGCUAc-- -3' miRNA: 3'- -CGU--CUCuuCGU----CUGCCGCUCGGUacc -5' |
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29938 | 3' | -54.8 | NC_006273.1 | + | 94325 | 0.66 | 0.978971 |
Target: 5'- aCGGGGAaaAGCgAGACGGUGcucuGGCCG-GGc -3' miRNA: 3'- cGUCUCU--UCG-UCUGCCGC----UCGGUaCC- -5' |
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29938 | 3' | -54.8 | NC_006273.1 | + | 193808 | 0.66 | 0.978971 |
Target: 5'- -aGGAGGcuauGGCGcGGCGGCGAcagcgcauGCUGUGGc -3' miRNA: 3'- cgUCUCU----UCGU-CUGCCGCU--------CGGUACC- -5' |
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29938 | 3' | -54.8 | NC_006273.1 | + | 147017 | 0.66 | 0.978971 |
Target: 5'- gGCAGAaaAAGUguACGGCG-GCCAUGa -3' miRNA: 3'- -CGUCUc-UUCGucUGCCGCuCGGUACc -5' |
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29938 | 3' | -54.8 | NC_006273.1 | + | 140622 | 0.66 | 0.978971 |
Target: 5'- cCGGAGggGCccaaaagccAGcGgGGCGGGCCGggaagGGg -3' miRNA: 3'- cGUCUCuuCG---------UC-UgCCGCUCGGUa----CC- -5' |
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29938 | 3' | -54.8 | NC_006273.1 | + | 64086 | 0.66 | 0.978971 |
Target: 5'- uCAGAGcAGCGGcGgGGCGAGCaccGGa -3' miRNA: 3'- cGUCUCuUCGUC-UgCCGCUCGguaCC- -5' |
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29938 | 3' | -54.8 | NC_006273.1 | + | 34995 | 0.66 | 0.976675 |
Target: 5'- gGCGGcGAAGCGacgcggagcGACGGCGguaaAGCCAg-- -3' miRNA: 3'- -CGUCuCUUCGU---------CUGCCGC----UCGGUacc -5' |
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29938 | 3' | -54.8 | NC_006273.1 | + | 140837 | 0.66 | 0.976675 |
Target: 5'- uCAGAGAGGUguuacAGGCGGUGcgcGGCCGcuucucgGGg -3' miRNA: 3'- cGUCUCUUCG-----UCUGCCGC---UCGGUa------CC- -5' |
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29938 | 3' | -54.8 | NC_006273.1 | + | 235057 | 0.66 | 0.976436 |
Target: 5'- uCAGGGGugugucgGGguGuguUGGCGGGCCGUGu -3' miRNA: 3'- cGUCUCU-------UCguCu--GCCGCUCGGUACc -5' |
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29938 | 3' | -54.8 | NC_006273.1 | + | 98140 | 0.66 | 0.976436 |
Target: 5'- cCGGGGAAGCGGGCG-CGAguuuuccgacuuaGCCuuUGGu -3' miRNA: 3'- cGUCUCUUCGUCUGCcGCU-------------CGGu-ACC- -5' |
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29938 | 3' | -54.8 | NC_006273.1 | + | 226 | 0.66 | 0.976436 |
Target: 5'- uCAGGGGugugucgGGguGuguUGGCGGGCCGUGu -3' miRNA: 3'- cGUCUCU-------UCguCu--GCCGCUCGGUACc -5' |
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29938 | 3' | -54.8 | NC_006273.1 | + | 195119 | 0.66 | 0.976436 |
Target: 5'- uCAGGGGugugucgGGguGuguUGGCGGGCCGUGu -3' miRNA: 3'- cGUCUCU-------UCguCu--GCCGCUCGGUACc -5' |
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29938 | 3' | -54.8 | NC_006273.1 | + | 208163 | 0.66 | 0.9742 |
Target: 5'- cCGGAcGAGGaCAGcaaaACGGCGcagccacauaaGGCCGUGGu -3' miRNA: 3'- cGUCU-CUUC-GUC----UGCCGC-----------UCGGUACC- -5' |
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29938 | 3' | -54.8 | NC_006273.1 | + | 106087 | 0.66 | 0.9742 |
Target: 5'- cGCGGuacccGGGAGcCAGAUGGUGGGUCGg-- -3' miRNA: 3'- -CGUC-----UCUUC-GUCUGCCGCUCGGUacc -5' |
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29938 | 3' | -54.8 | NC_006273.1 | + | 199443 | 0.66 | 0.972626 |
Target: 5'- aGCGGGGuucaccuGCAGcgcuacgugcgcgccACGGCGGGUCGUuGGc -3' miRNA: 3'- -CGUCUCuu-----CGUC---------------UGCCGCUCGGUA-CC- -5' |
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29938 | 3' | -54.8 | NC_006273.1 | + | 124595 | 0.66 | 0.971539 |
Target: 5'- -uGGAGAGGCAGGCGGUcu-UCAUGu -3' miRNA: 3'- cgUCUCUUCGUCUGCCGcucGGUACc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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