miRNA display CGI


Results 1 - 20 of 130 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29938 3' -54.8 NC_006273.1 + 234308 0.66 0.968687
Target:  5'- uCGGAGggGCGccCGGCG-GCCcgcgGGg -3'
miRNA:   3'- cGUCUCuuCGUcuGCCGCuCGGua--CC- -5'
29938 3' -54.8 NC_006273.1 + 106087 0.66 0.9742
Target:  5'- cGCGGuacccGGGAGcCAGAUGGUGGGUCGg-- -3'
miRNA:   3'- -CGUC-----UCUUC-GUCUGCCGCUCGGUacc -5'
29938 3' -54.8 NC_006273.1 + 138022 0.66 0.968687
Target:  5'- gGCAGuGAcGCuAGGCGGCGccggcGCC-UGGu -3'
miRNA:   3'- -CGUCuCUuCG-UCUGCCGCu----CGGuACC- -5'
29938 3' -54.8 NC_006273.1 + 211713 0.66 0.968687
Target:  5'- -aGGAGGAGCAGGCG-CuGGCCAc-- -3'
miRNA:   3'- cgUCUCUUCGUCUGCcGcUCGGUacc -5'
29938 3' -54.8 NC_006273.1 + 103965 0.66 0.968687
Target:  5'- cCAGu--AGCAGACGcGCGAacucGCcCAUGGa -3'
miRNA:   3'- cGUCucuUCGUCUGC-CGCU----CG-GUACC- -5'
29938 3' -54.8 NC_006273.1 + 147017 0.66 0.978971
Target:  5'- gGCAGAaaAAGUguACGGCG-GCCAUGa -3'
miRNA:   3'- -CGUCUc-UUCGucUGCCGCuCGGUACc -5'
29938 3' -54.8 NC_006273.1 + 113525 0.66 0.968687
Target:  5'- cCGGGGGGcgcGCGGGCGGCGAagagaaggGCUAcGGg -3'
miRNA:   3'- cGUCUCUU---CGUCUGCCGCU--------CGGUaCC- -5'
29938 3' -54.8 NC_006273.1 + 48573 0.66 0.971539
Target:  5'- gGguGAGggGCGGcaugccguUGGCGGcGCCG-GGa -3'
miRNA:   3'- -CguCUCuuCGUCu-------GCCGCU-CGGUaCC- -5'
29938 3' -54.8 NC_006273.1 + 65834 0.66 0.981095
Target:  5'- gGCGGcGcAGCAGGCGGUacgcgccuaucuGGGCCAuccaagaaacUGGa -3'
miRNA:   3'- -CGUCuCuUCGUCUGCCG------------CUCGGU----------ACC- -5'
29938 3' -54.8 NC_006273.1 + 98140 0.66 0.976436
Target:  5'- cCGGGGAAGCGGGCG-CGAguuuuccgacuuaGCCuuUGGu -3'
miRNA:   3'- cGUCUCUUCGUCUGCcGCU-------------CGGu-ACC- -5'
29938 3' -54.8 NC_006273.1 + 162361 0.66 0.971539
Target:  5'- gGUGGuGGAGGCGG-CGGCGcuAGUgGUGGc -3'
miRNA:   3'- -CGUC-UCUUCGUCuGCCGC--UCGgUACC- -5'
29938 3' -54.8 NC_006273.1 + 140837 0.66 0.976675
Target:  5'- uCAGAGAGGUguuacAGGCGGUGcgcGGCCGcuucucgGGg -3'
miRNA:   3'- cGUCUCUUCG-----UCUGCCGC---UCGGUa------CC- -5'
29938 3' -54.8 NC_006273.1 + 195119 0.66 0.976436
Target:  5'- uCAGGGGugugucgGGguGuguUGGCGGGCCGUGu -3'
miRNA:   3'- cGUCUCU-------UCguCu--GCCGCUCGGUACc -5'
29938 3' -54.8 NC_006273.1 + 193808 0.66 0.978971
Target:  5'- -aGGAGGcuauGGCGcGGCGGCGAcagcgcauGCUGUGGc -3'
miRNA:   3'- cgUCUCU----UCGU-CUGCCGCU--------CGGUACC- -5'
29938 3' -54.8 NC_006273.1 + 217296 0.66 0.981095
Target:  5'- aGCAGAGA--UAGuCGGCG-GCCAg-- -3'
miRNA:   3'- -CGUCUCUucGUCuGCCGCuCGGUacc -5'
29938 3' -54.8 NC_006273.1 + 34995 0.66 0.976675
Target:  5'- gGCGGcGAAGCGacgcggagcGACGGCGguaaAGCCAg-- -3'
miRNA:   3'- -CGUCuCUUCGU---------CUGCCGC----UCGGUacc -5'
29938 3' -54.8 NC_006273.1 + 208163 0.66 0.9742
Target:  5'- cCGGAcGAGGaCAGcaaaACGGCGcagccacauaaGGCCGUGGu -3'
miRNA:   3'- cGUCU-CUUC-GUC----UGCCGC-----------UCGGUACC- -5'
29938 3' -54.8 NC_006273.1 + 41465 0.66 0.968687
Target:  5'- gGUAGGugucGggGcCGGAgCGG-GGGCCGUGGa -3'
miRNA:   3'- -CGUCU----CuuC-GUCU-GCCgCUCGGUACC- -5'
29938 3' -54.8 NC_006273.1 + 124595 0.66 0.971539
Target:  5'- -uGGAGAGGCAGGCGGUcu-UCAUGu -3'
miRNA:   3'- cgUCUCUUCGUCUGCCGcucGGUACc -5'
29938 3' -54.8 NC_006273.1 + 140682 0.66 0.968687
Target:  5'- cGCAGGcGAc---GACGGCGGGUgGUGGu -3'
miRNA:   3'- -CGUCU-CUucguCUGCCGCUCGgUACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.