miRNA display CGI


Results 1 - 20 of 130 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29938 3' -54.8 NC_006273.1 + 47202 1.13 0.003452
Target:  5'- gGCAGAGAAGCAGACGGCGAGCCAUGGa -3'
miRNA:   3'- -CGUCUCUUCGUCUGCCGCUCGGUACC- -5'
29938 3' -54.8 NC_006273.1 + 147976 0.83 0.241169
Target:  5'- gGCGGAGGAGCcGGCGGCG-GCgGUGGu -3'
miRNA:   3'- -CGUCUCUUCGuCUGCCGCuCGgUACC- -5'
29938 3' -54.8 NC_006273.1 + 73241 0.81 0.317849
Target:  5'- cGCAGAGggGCgcgaagAGACGGCgcaGAGCCugGUGGa -3'
miRNA:   3'- -CGUCUCuuCG------UCUGCCG---CUCGG--UACC- -5'
29938 3' -54.8 NC_006273.1 + 230664 0.78 0.473419
Target:  5'- -uGGAGAgAGCAGGCGGacCGAGCCAgagGGa -3'
miRNA:   3'- cgUCUCU-UCGUCUGCC--GCUCGGUa--CC- -5'
29938 3' -54.8 NC_006273.1 + 161793 0.77 0.520394
Target:  5'- gGCGGcAGcGGCAG-CGGCGGGCCA-GGa -3'
miRNA:   3'- -CGUC-UCuUCGUCuGCCGCUCGGUaCC- -5'
29938 3' -54.8 NC_006273.1 + 30157 0.76 0.559239
Target:  5'- cGCcGAGu--CAGugGGCGAGCCcgGGg -3'
miRNA:   3'- -CGuCUCuucGUCugCCGCUCGGuaCC- -5'
29938 3' -54.8 NC_006273.1 + 196925 0.76 0.588897
Target:  5'- gGCGGGGAcGCGccgugcgcGAUGGCagGAGCCGUGGg -3'
miRNA:   3'- -CGUCUCUuCGU--------CUGCCG--CUCGGUACC- -5'
29938 3' -54.8 NC_006273.1 + 2032 0.76 0.588897
Target:  5'- gGCGGGGAcGCGccgugcgcGAUGGCagGAGCCGUGGg -3'
miRNA:   3'- -CGUCUCUuCGU--------CUGCCG--CUCGGUACC- -5'
29938 3' -54.8 NC_006273.1 + 188963 0.75 0.628829
Target:  5'- cGgGGAGAacgGGCAG-UGGCGGGCCcgAUGGg -3'
miRNA:   3'- -CgUCUCU---UCGUCuGCCGCUCGG--UACC- -5'
29938 3' -54.8 NC_006273.1 + 210883 0.75 0.628829
Target:  5'- -gAGAGAAGCuacccaAGACGGCcaccGCCGUGGa -3'
miRNA:   3'- cgUCUCUUCG------UCUGCCGcu--CGGUACC- -5'
29938 3' -54.8 NC_006273.1 + 74226 0.74 0.688637
Target:  5'- aCAGcAGAGGgAGACGGCGcAGCCAg-- -3'
miRNA:   3'- cGUC-UCUUCgUCUGCCGC-UCGGUacc -5'
29938 3' -54.8 NC_006273.1 + 178835 0.74 0.688637
Target:  5'- gGCGGAGGAGgAGGCGGCG-GUU-UGGa -3'
miRNA:   3'- -CGUCUCUUCgUCUGCCGCuCGGuACC- -5'
29938 3' -54.8 NC_006273.1 + 72804 0.74 0.698496
Target:  5'- gGUAGAGccGCAGACGGCGcAGCa--GGu -3'
miRNA:   3'- -CGUCUCuuCGUCUGCCGC-UCGguaCC- -5'
29938 3' -54.8 NC_006273.1 + 79634 0.73 0.708302
Target:  5'- aGCAGGGuggaguAGCAGAgGuuGUGAGCCAUGa -3'
miRNA:   3'- -CGUCUCu-----UCGUCUgC--CGCUCGGUACc -5'
29938 3' -54.8 NC_006273.1 + 144750 0.73 0.718045
Target:  5'- uGCAGAacgugcugcgGAGGCAcgacGCGGCG-GCCGUGGc -3'
miRNA:   3'- -CGUCU----------CUUCGUc---UGCCGCuCGGUACC- -5'
29938 3' -54.8 NC_006273.1 + 64000 0.73 0.74682
Target:  5'- gGCGGAGGAGCAuccguGACcuCGAGCCAccaUGGg -3'
miRNA:   3'- -CGUCUCUUCGU-----CUGccGCUCGGU---ACC- -5'
29938 3' -54.8 NC_006273.1 + 114086 0.73 0.74682
Target:  5'- gGC-GAG-AGCGGGCGGCG-GUgGUGGg -3'
miRNA:   3'- -CGuCUCuUCGUCUGCCGCuCGgUACC- -5'
29938 3' -54.8 NC_006273.1 + 34677 0.72 0.756231
Target:  5'- aGCGGAGccGAGCAG-CGGaccuucgGAGCCAUGa -3'
miRNA:   3'- -CGUCUC--UUCGUCuGCCg------CUCGGUACc -5'
29938 3' -54.8 NC_006273.1 + 189979 0.72 0.77473
Target:  5'- cGCGGAGAcugggcuGCAGGCGGCagcggauacuGGCCGUGa -3'
miRNA:   3'- -CGUCUCUu------CGUCUGCCGc---------UCGGUACc -5'
29938 3' -54.8 NC_006273.1 + 133729 0.72 0.782899
Target:  5'- aGCGGccAGAacgugaccuuccuAGC-GACGGCG-GCCAUGGa -3'
miRNA:   3'- -CGUC--UCU-------------UCGuCUGCCGCuCGGUACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.