miRNA display CGI


Results 21 - 40 of 130 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29938 3' -54.8 NC_006273.1 + 162361 0.66 0.971539
Target:  5'- gGUGGuGGAGGCGG-CGGCGcuAGUgGUGGc -3'
miRNA:   3'- -CGUC-UCUUCGUCuGCCGC--UCGgUACC- -5'
29938 3' -54.8 NC_006273.1 + 8080 0.66 0.971539
Target:  5'- ---uGGAAGUGGACGGCGAuaacGCCAc-- -3'
miRNA:   3'- cgucUCUUCGUCUGCCGCU----CGGUacc -5'
29938 3' -54.8 NC_006273.1 + 124595 0.66 0.971539
Target:  5'- -uGGAGAGGCAGGCGGUcu-UCAUGu -3'
miRNA:   3'- cgUCUCUUCGUCUGCCGcucGGUACc -5'
29938 3' -54.8 NC_006273.1 + 39415 0.66 0.968687
Target:  5'- uCGGAGggGCGccCGGCG-GCCcgcgGGg -3'
miRNA:   3'- cGUCUCuuCGUcuGCCGCuCGGua--CC- -5'
29938 3' -54.8 NC_006273.1 + 103965 0.66 0.968687
Target:  5'- cCAGu--AGCAGACGcGCGAacucGCcCAUGGa -3'
miRNA:   3'- cGUCucuUCGUCUGC-CGCU----CG-GUACC- -5'
29938 3' -54.8 NC_006273.1 + 118072 0.66 0.968687
Target:  5'- cGCGG-GAAGaaCGGACGGCGAcGCU--GGa -3'
miRNA:   3'- -CGUCuCUUC--GUCUGCCGCU-CGGuaCC- -5'
29938 3' -54.8 NC_006273.1 + 211713 0.66 0.968687
Target:  5'- -aGGAGGAGCAGGCG-CuGGCCAc-- -3'
miRNA:   3'- cgUCUCUUCGUCUGCcGcUCGGUacc -5'
29938 3' -54.8 NC_006273.1 + 41465 0.66 0.968687
Target:  5'- gGUAGGugucGggGcCGGAgCGG-GGGCCGUGGa -3'
miRNA:   3'- -CGUCU----CuuC-GUCU-GCCgCUCGGUACC- -5'
29938 3' -54.8 NC_006273.1 + 234308 0.66 0.968687
Target:  5'- uCGGAGggGCGccCGGCG-GCCcgcgGGg -3'
miRNA:   3'- cGUCUCuuCGUcuGCCGCuCGGua--CC- -5'
29938 3' -54.8 NC_006273.1 + 113525 0.66 0.968687
Target:  5'- cCGGGGGGcgcGCGGGCGGCGAagagaaggGCUAcGGg -3'
miRNA:   3'- cGUCUCUU---CGUCUGCCGCU--------CGGUaCC- -5'
29938 3' -54.8 NC_006273.1 + 140682 0.66 0.968687
Target:  5'- cGCAGGcGAc---GACGGCGGGUgGUGGu -3'
miRNA:   3'- -CGUCU-CUucguCUGCCGCUCGgUACC- -5'
29938 3' -54.8 NC_006273.1 + 138022 0.66 0.968687
Target:  5'- gGCAGuGAcGCuAGGCGGCGccggcGCC-UGGu -3'
miRNA:   3'- -CGUCuCUuCG-UCUGCCGCu----CGGuACC- -5'
29938 3' -54.8 NC_006273.1 + 101737 0.67 0.965637
Target:  5'- -aAGuGAGGCucAGACGGCGGucGCCGgcggcaUGGg -3'
miRNA:   3'- cgUCuCUUCG--UCUGCCGCU--CGGU------ACC- -5'
29938 3' -54.8 NC_006273.1 + 160556 0.67 0.965637
Target:  5'- cGCGGAGcccGCGGcUGGUacGAGCgGUGGg -3'
miRNA:   3'- -CGUCUCuu-CGUCuGCCG--CUCGgUACC- -5'
29938 3' -54.8 NC_006273.1 + 183940 0.67 0.965637
Target:  5'- cCGGGGAGGgcgacgugguaCAGAUGGUG-GUCGUGGu -3'
miRNA:   3'- cGUCUCUUC-----------GUCUGCCGCuCGGUACC- -5'
29938 3' -54.8 NC_006273.1 + 101346 0.67 0.965637
Target:  5'- cGUGGAG-GGCaacaccaaccAGGCGGCG-GCCGUGc -3'
miRNA:   3'- -CGUCUCuUCG----------UCUGCCGCuCGGUACc -5'
29938 3' -54.8 NC_006273.1 + 189547 0.67 0.965637
Target:  5'- cGCcGAGGAGCccGACGcCGAGCCAc-- -3'
miRNA:   3'- -CGuCUCUUCGu-CUGCcGCUCGGUacc -5'
29938 3' -54.8 NC_006273.1 + 36724 0.67 0.965637
Target:  5'- aGCGGAGgcGCGcGAgCGGCGgcacagcucGGCCcgAUGGu -3'
miRNA:   3'- -CGUCUCuuCGU-CU-GCCGC---------UCGG--UACC- -5'
29938 3' -54.8 NC_006273.1 + 196601 0.67 0.962383
Target:  5'- cGCcGAGAGGC-GACGGCgcucggacggGAGCUgcgccggcgGUGGg -3'
miRNA:   3'- -CGuCUCUUCGuCUGCCG----------CUCGG---------UACC- -5'
29938 3' -54.8 NC_006273.1 + 14014 0.67 0.962383
Target:  5'- cGCGGGGuGGCGGAgCGGgGAGCg---- -3'
miRNA:   3'- -CGUCUCuUCGUCU-GCCgCUCGguacc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.