miRNA display CGI


Results 1 - 20 of 130 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29938 3' -54.8 NC_006273.1 + 226 0.66 0.976436
Target:  5'- uCAGGGGugugucgGGguGuguUGGCGGGCCGUGu -3'
miRNA:   3'- cGUCUCU-------UCguCu--GCCGCUCGGUACc -5'
29938 3' -54.8 NC_006273.1 + 861 0.68 0.92331
Target:  5'- aGUGGAcgucGGAGguGucCGGCG-GCCAUGGc -3'
miRNA:   3'- -CGUCU----CUUCguCu-GCCGCuCGGUACC- -5'
29938 3' -54.8 NC_006273.1 + 1090 0.68 0.92331
Target:  5'- uGCGGGGAcggGGCgucgcgGGAUGGCGGGCUGUu- -3'
miRNA:   3'- -CGUCUCU---UCG------UCUGCCGCUCGGUAcc -5'
29938 3' -54.8 NC_006273.1 + 1191 0.72 0.801543
Target:  5'- gGCGGGGAcggggAGUugcgGGAUGGCGAGCUguugcGUGGc -3'
miRNA:   3'- -CGUCUCU-----UCG----UCUGCCGCUCGG-----UACC- -5'
29938 3' -54.8 NC_006273.1 + 1252 0.66 0.981095
Target:  5'- gGCGGGGAcGgGGACGG-GGGCCu--- -3'
miRNA:   3'- -CGUCUCUuCgUCUGCCgCUCGGuacc -5'
29938 3' -54.8 NC_006273.1 + 2032 0.76 0.588897
Target:  5'- gGCGGGGAcGCGccgugcgcGAUGGCagGAGCCGUGGg -3'
miRNA:   3'- -CGUCUCUuCGU--------CUGCCG--CUCGGUACC- -5'
29938 3' -54.8 NC_006273.1 + 2175 0.67 0.955248
Target:  5'- gGCGGcAGcGGCAGcaGCGGCGGcGCCgacggugaugGUGGg -3'
miRNA:   3'- -CGUC-UCuUCGUC--UGCCGCU-CGG----------UACC- -5'
29938 3' -54.8 NC_006273.1 + 8080 0.66 0.971539
Target:  5'- ---uGGAAGUGGACGGCGAuaacGCCAc-- -3'
miRNA:   3'- cgucUCUUCGUCUGCCGCU----CGGUacc -5'
29938 3' -54.8 NC_006273.1 + 13812 0.7 0.87328
Target:  5'- aGCAGGGAAcCAGAUGGCGAcggacGUCG-GGa -3'
miRNA:   3'- -CGUCUCUUcGUCUGCCGCU-----CGGUaCC- -5'
29938 3' -54.8 NC_006273.1 + 14014 0.67 0.962383
Target:  5'- cGCGGGGuGGCGGAgCGGgGAGCg---- -3'
miRNA:   3'- -CGUCUCuUCGUCU-GCCgCUCGguacc -5'
29938 3' -54.8 NC_006273.1 + 19329 0.68 0.947246
Target:  5'- -gAGGGAacgAGCGGugGGCcugaAGCgAUGGa -3'
miRNA:   3'- cgUCUCU---UCGUCugCCGc---UCGgUACC- -5'
29938 3' -54.8 NC_006273.1 + 29816 0.69 0.893693
Target:  5'- gGCuGGGAGuGguGGCGGC-AGCCAcGGa -3'
miRNA:   3'- -CGuCUCUU-CguCUGCCGcUCGGUaCC- -5'
29938 3' -54.8 NC_006273.1 + 30157 0.76 0.559239
Target:  5'- cGCcGAGu--CAGugGGCGAGCCcgGGg -3'
miRNA:   3'- -CGuCUCuucGUCugCCGCUCGGuaCC- -5'
29938 3' -54.8 NC_006273.1 + 34677 0.72 0.756231
Target:  5'- aGCGGAGccGAGCAG-CGGaccuucgGAGCCAUGa -3'
miRNA:   3'- -CGUCUC--UUCGUCuGCCg------CUCGGUACc -5'
29938 3' -54.8 NC_006273.1 + 34939 0.7 0.866056
Target:  5'- aGCGGuGGAGguGGCGGCuGAuCCAcGGg -3'
miRNA:   3'- -CGUCuCUUCguCUGCCG-CUcGGUaCC- -5'
29938 3' -54.8 NC_006273.1 + 34995 0.66 0.976675
Target:  5'- gGCGGcGAAGCGacgcggagcGACGGCGguaaAGCCAg-- -3'
miRNA:   3'- -CGUCuCUUCGU---------CUGCCGC----UCGGUacc -5'
29938 3' -54.8 NC_006273.1 + 36724 0.67 0.965637
Target:  5'- aGCGGAGgcGCGcGAgCGGCGgcacagcucGGCCcgAUGGu -3'
miRNA:   3'- -CGUCUCuuCGU-CU-GCCGC---------UCGG--UACC- -5'
29938 3' -54.8 NC_006273.1 + 37136 0.72 0.792741
Target:  5'- cGCGGAGguGCuGGCGGCcguGGCCuGUGGc -3'
miRNA:   3'- -CGUCUCuuCGuCUGCCGc--UCGG-UACC- -5'
29938 3' -54.8 NC_006273.1 + 37237 0.7 0.883044
Target:  5'- gGCAGAGGaaGGCGcGACGGCggcgacgacgaggagGAagacGCCGUGGc -3'
miRNA:   3'- -CGUCUCU--UCGU-CUGCCG---------------CU----CGGUACC- -5'
29938 3' -54.8 NC_006273.1 + 39415 0.66 0.968687
Target:  5'- uCGGAGggGCGccCGGCG-GCCcgcgGGg -3'
miRNA:   3'- cGUCUCuuCGUcuGCCGCuCGGua--CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.