miRNA display CGI


Results 1 - 20 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29938 5' -63.8 NC_006273.1 + 196338 0.66 0.724485
Target:  5'- gACCCGacGgUgGGCGACaaGGCCgGCc -3'
miRNA:   3'- -UGGGCcuUgAgCCGCUGggCCGGgCG- -5'
29938 5' -63.8 NC_006273.1 + 124029 0.66 0.724485
Target:  5'- cACCUGGAucacgccgcugaACcCaGCGGCgCGGCCgCGCu -3'
miRNA:   3'- -UGGGCCU------------UGaGcCGCUGgGCCGG-GCG- -5'
29938 5' -63.8 NC_006273.1 + 94318 0.66 0.724485
Target:  5'- cCCCGGccgaGGCcCGGCG--CCGGUCCGUc -3'
miRNA:   3'- uGGGCC----UUGaGCCGCugGGCCGGGCG- -5'
29938 5' -63.8 NC_006273.1 + 216897 0.66 0.724485
Target:  5'- aGCCCagcauGAGCaacggcuccaccUCGGUgcGACCCGGCgUGCg -3'
miRNA:   3'- -UGGGc----CUUG------------AGCCG--CUGGGCCGgGCG- -5'
29938 5' -63.8 NC_006273.1 + 1445 0.66 0.724485
Target:  5'- gACCCGacGgUgGGCGACaaGGCCgGCc -3'
miRNA:   3'- -UGGGCcuUgAgCCGCUGggCCGGgCG- -5'
29938 5' -63.8 NC_006273.1 + 147886 0.66 0.724485
Target:  5'- aACUCcGAcauucGCgUCGGCG-CCCGGgCCGCc -3'
miRNA:   3'- -UGGGcCU-----UG-AGCCGCuGGGCCgGGCG- -5'
29938 5' -63.8 NC_006273.1 + 193451 0.66 0.715435
Target:  5'- aACCgGGAACUa-GCGGCaagGGCgCCGCu -3'
miRNA:   3'- -UGGgCCUUGAgcCGCUGgg-CCG-GGCG- -5'
29938 5' -63.8 NC_006273.1 + 200669 0.66 0.715435
Target:  5'- cGCCCGaGGAUcUGGCGGCC--GCCgGCg -3'
miRNA:   3'- -UGGGC-CUUGaGCCGCUGGgcCGGgCG- -5'
29938 5' -63.8 NC_006273.1 + 230857 0.66 0.715435
Target:  5'- uCCUggGGAACgggUCGGCGG-CCGGUCgGCu -3'
miRNA:   3'- uGGG--CCUUG---AGCCGCUgGGCCGGgCG- -5'
29938 5' -63.8 NC_006273.1 + 51624 0.66 0.715435
Target:  5'- gGCgaCGGcaGGCUCGGCGGCgCGGacagcaCCCGUu -3'
miRNA:   3'- -UGg-GCC--UUGAGCCGCUGgGCC------GGGCG- -5'
29938 5' -63.8 NC_006273.1 + 27482 0.66 0.715435
Target:  5'- cACCUGGuGCUC--CGACCUG-CCCGCc -3'
miRNA:   3'- -UGGGCCuUGAGccGCUGGGCcGGGCG- -5'
29938 5' -63.8 NC_006273.1 + 5514 0.66 0.706326
Target:  5'- -aCUGGAACaccacgCGGUccGGCUCaGCCCGCg -3'
miRNA:   3'- ugGGCCUUGa-----GCCG--CUGGGcCGGGCG- -5'
29938 5' -63.8 NC_006273.1 + 167158 0.66 0.706326
Target:  5'- -gCUGGAAgUCGGCGGgcgggggcgugaUCCGaCCCGCc -3'
miRNA:   3'- ugGGCCUUgAGCCGCU------------GGGCcGGGCG- -5'
29938 5' -63.8 NC_006273.1 + 51692 0.66 0.706326
Target:  5'- gGCCUGGAugUgGGCcaacGAaUUGGCUCGCa -3'
miRNA:   3'- -UGGGCCUugAgCCG----CUgGGCCGGGCG- -5'
29938 5' -63.8 NC_006273.1 + 83407 0.66 0.705412
Target:  5'- cACCCGGcccggCGGCG-CCCGaGCgggacauCCGCg -3'
miRNA:   3'- -UGGGCCuuga-GCCGCuGGGC-CG-------GGCG- -5'
29938 5' -63.8 NC_006273.1 + 44981 0.66 0.703583
Target:  5'- --gCGGGAUcgUCGGCggaugucucuucggGACCCGGCaUCGCa -3'
miRNA:   3'- uggGCCUUG--AGCCG--------------CUGGGCCG-GGCG- -5'
29938 5' -63.8 NC_006273.1 + 130854 0.66 0.700835
Target:  5'- aGCgCGGGucacaagcugucacuGC-CGcGCGACCCGGCCgccgauCGCg -3'
miRNA:   3'- -UGgGCCU---------------UGaGC-CGCUGGGCCGG------GCG- -5'
29938 5' -63.8 NC_006273.1 + 103015 0.66 0.697164
Target:  5'- cUCCGGAcgaaACgccgCGGCGGCagCGG-CCGCg -3'
miRNA:   3'- uGGGCCU----UGa---GCCGCUGg-GCCgGGCG- -5'
29938 5' -63.8 NC_006273.1 + 93920 0.66 0.697164
Target:  5'- gACCCGGuGCgcaUGcGCGGgCCaGGaCCCGCg -3'
miRNA:   3'- -UGGGCCuUGa--GC-CGCUgGG-CC-GGGCG- -5'
29938 5' -63.8 NC_006273.1 + 38214 0.66 0.697164
Target:  5'- cAUCCGGAGa-CGGCGgaaACCgCGGCgCCGg -3'
miRNA:   3'- -UGGGCCUUgaGCCGC---UGG-GCCG-GGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.