miRNA display CGI


Results 1 - 20 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29938 5' -63.8 NC_006273.1 + 47237 1.09 0.001136
Target:  5'- gACCCGGAACUCGGCGACCCGGCCCGCc -3'
miRNA:   3'- -UGGGCCUUGAGCCGCUGGGCCGGGCG- -5'
29938 5' -63.8 NC_006273.1 + 40500 0.79 0.128909
Target:  5'- gGCCCGGcuGCUgccggacaGGCGACCCGGCgCGCu -3'
miRNA:   3'- -UGGGCCu-UGAg-------CCGCUGGGCCGgGCG- -5'
29938 5' -63.8 NC_006273.1 + 34753 0.79 0.141666
Target:  5'- gACUCGcGGACUCGGUGcCCCGGCCCc- -3'
miRNA:   3'- -UGGGC-CUUGAGCCGCuGGGCCGGGcg -5'
29938 5' -63.8 NC_006273.1 + 13571 0.77 0.191443
Target:  5'- cGCCgGGuGCUCacccgccgGGCGGCCCGGgCCGCc -3'
miRNA:   3'- -UGGgCCuUGAG--------CCGCUGGGCCgGGCG- -5'
29938 5' -63.8 NC_006273.1 + 79027 0.76 0.21923
Target:  5'- cACCCGGGuuuuucuCUUGGuCGaACCCGGCuuGCg -3'
miRNA:   3'- -UGGGCCUu------GAGCC-GC-UGGGCCGggCG- -5'
29938 5' -63.8 NC_006273.1 + 57013 0.75 0.238032
Target:  5'- aACUCGGGACUgGGaCGAggaggaggaggcguCCgCGGCCCGCg -3'
miRNA:   3'- -UGGGCCUUGAgCC-GCU--------------GG-GCCGGGCG- -5'
29938 5' -63.8 NC_006273.1 + 221792 0.75 0.250388
Target:  5'- gGCCCuccAGCaCGGCGGCCCGGgCCGCc -3'
miRNA:   3'- -UGGGcc-UUGaGCCGCUGGGCCgGGCG- -5'
29938 5' -63.8 NC_006273.1 + 204778 0.75 0.261558
Target:  5'- cGCUCGGuuuCUUGGCGGCgCCGGUgCCGCc -3'
miRNA:   3'- -UGGGCCuu-GAGCCGCUG-GGCCG-GGCG- -5'
29938 5' -63.8 NC_006273.1 + 592 0.74 0.27313
Target:  5'- cACCUaGGAgggugcgcGCUCGGgGACCCaGUCCGCg -3'
miRNA:   3'- -UGGG-CCU--------UGAGCCgCUGGGcCGGGCG- -5'
29938 5' -63.8 NC_006273.1 + 131821 0.74 0.27313
Target:  5'- cCCCcc-ACUCGGCGACCa-GCCCGCa -3'
miRNA:   3'- uGGGccuUGAGCCGCUGGgcCGGGCG- -5'
29938 5' -63.8 NC_006273.1 + 195485 0.74 0.27313
Target:  5'- cACCUaGGAgggugcgcGCUCGGgGACCCaGUCCGCg -3'
miRNA:   3'- -UGGG-CCU--------UGAGCCgCUGGGcCGGGCG- -5'
29938 5' -63.8 NC_006273.1 + 94628 0.74 0.2975
Target:  5'- cGCCgCGGAACggaCGG-GACCCggGGUCCGCg -3'
miRNA:   3'- -UGG-GCCUUGa--GCCgCUGGG--CCGGGCG- -5'
29938 5' -63.8 NC_006273.1 + 45872 0.74 0.2975
Target:  5'- gGCCCuGGAACUcucacacagcgCGGCGGCCgGG-CCGCc -3'
miRNA:   3'- -UGGG-CCUUGA-----------GCCGCUGGgCCgGGCG- -5'
29938 5' -63.8 NC_006273.1 + 30682 0.73 0.30385
Target:  5'- cGCCuCGGGGCUcgcCGGCGACaCCcaaGGCCgGCa -3'
miRNA:   3'- -UGG-GCCUUGA---GCCGCUG-GG---CCGGgCG- -5'
29938 5' -63.8 NC_006273.1 + 138148 0.73 0.310304
Target:  5'- gACgCGGcuCauggCGGCGGCCaCGGCCUGCg -3'
miRNA:   3'- -UGgGCCuuGa---GCCGCUGG-GCCGGGCG- -5'
29938 5' -63.8 NC_006273.1 + 139290 0.73 0.310304
Target:  5'- cAUCaCGGAACaggCGGCGACCgCGGaCUCGCc -3'
miRNA:   3'- -UGG-GCCUUGa--GCCGCUGG-GCC-GGGCG- -5'
29938 5' -63.8 NC_006273.1 + 192876 0.73 0.323523
Target:  5'- cGCCgUGGAAaaCGGCGACUCGGCCgacaCGCu -3'
miRNA:   3'- -UGG-GCCUUgaGCCGCUGGGCCGG----GCG- -5'
29938 5' -63.8 NC_006273.1 + 36602 0.73 0.330289
Target:  5'- gUCCGG-GCUCGGUGACCucuCGGUCgGCg -3'
miRNA:   3'- uGGGCCuUGAGCCGCUGG---GCCGGgCG- -5'
29938 5' -63.8 NC_006273.1 + 91212 0.73 0.337157
Target:  5'- cGCuCCaGGGcCUCGGCGAUCuCGGCgCGCg -3'
miRNA:   3'- -UG-GG-CCUuGAGCCGCUGG-GCCGgGCG- -5'
29938 5' -63.8 NC_006273.1 + 93567 0.73 0.337157
Target:  5'- aGCCUGGGcaACUUGaGCGGCggCGGCCUGCg -3'
miRNA:   3'- -UGGGCCU--UGAGC-CGCUGg-GCCGGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.