miRNA display CGI


Results 21 - 40 of 135 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29938 5' -63.8 NC_006273.1 + 93920 0.66 0.697164
Target:  5'- gACCCGGuGCgcaUGcGCGGgCCaGGaCCCGCg -3'
miRNA:   3'- -UGGGCCuUGa--GC-CGCUgGG-CC-GGGCG- -5'
29938 5' -63.8 NC_006273.1 + 198107 0.66 0.697164
Target:  5'- cGCaaGGGcuGCUCGGCGGCCaCGGCg--- -3'
miRNA:   3'- -UGggCCU--UGAGCCGCUGG-GCCGggcg -5'
29938 5' -63.8 NC_006273.1 + 122189 0.66 0.687958
Target:  5'- uUUCGGGACaaCGGCGACCgCGcgacuccaugcuGCCUGCg -3'
miRNA:   3'- uGGGCCUUGa-GCCGCUGG-GC------------CGGGCG- -5'
29938 5' -63.8 NC_006273.1 + 204698 0.66 0.678712
Target:  5'- gGCCuUGGGugUcgcCGGCGAgcCCCGaggcgcGCCCGCu -3'
miRNA:   3'- -UGG-GCCUugA---GCCGCU--GGGC------CGGGCG- -5'
29938 5' -63.8 NC_006273.1 + 130212 0.66 0.678712
Target:  5'- cUCCGGcuacCUgGGCGagGCCgCGGCgCCGCg -3'
miRNA:   3'- uGGGCCuu--GAgCCGC--UGG-GCCG-GGCG- -5'
29938 5' -63.8 NC_006273.1 + 154156 0.66 0.678712
Target:  5'- gACCUGGAcUUUGGCGACCUgcucaaguacauGGaguucgguauCCCGCu -3'
miRNA:   3'- -UGGGCCUuGAGCCGCUGGG------------CC----------GGGCG- -5'
29938 5' -63.8 NC_006273.1 + 142238 0.67 0.669435
Target:  5'- cGCCCGuuGCguccgccgUUGGUGuCgCUGGCCCGCa -3'
miRNA:   3'- -UGGGCcuUG--------AGCCGCuG-GGCCGGGCG- -5'
29938 5' -63.8 NC_006273.1 + 38175 0.67 0.669435
Target:  5'- uCUCGGAcggCGG-GACgCCGaGCCCGCg -3'
miRNA:   3'- uGGGCCUugaGCCgCUG-GGC-CGGGCG- -5'
29938 5' -63.8 NC_006273.1 + 36730 0.67 0.660132
Target:  5'- gGCgCGcGAGCggCGGCacaGCUCGGCCCGa -3'
miRNA:   3'- -UGgGC-CUUGa-GCCGc--UGGGCCGGGCg -5'
29938 5' -63.8 NC_006273.1 + 30039 0.67 0.660132
Target:  5'- aGCCCGGcggccaGACcacgGGCaacACCUGGCCUGCg -3'
miRNA:   3'- -UGGGCC------UUGag--CCGc--UGGGCCGGGCG- -5'
29938 5' -63.8 NC_006273.1 + 193981 0.67 0.650811
Target:  5'- cGCCCuGGGCUccgaCGGCGccguuGCCCGGggauaugaacCCCGCc -3'
miRNA:   3'- -UGGGcCUUGA----GCCGC-----UGGGCC----------GGGCG- -5'
29938 5' -63.8 NC_006273.1 + 133487 0.67 0.650811
Target:  5'- gGCgCGGAcGCUggCGGCGGCCCGGgCUu- -3'
miRNA:   3'- -UGgGCCU-UGA--GCCGCUGGGCCgGGcg -5'
29938 5' -63.8 NC_006273.1 + 33826 0.67 0.641477
Target:  5'- gACgCGGG--UUGGCacaGGCCCaGCCCGCg -3'
miRNA:   3'- -UGgGCCUugAGCCG---CUGGGcCGGGCG- -5'
29938 5' -63.8 NC_006273.1 + 182541 0.67 0.641477
Target:  5'- cACCCGGcguuCUCGGCa--CCGGUuacgCCGCc -3'
miRNA:   3'- -UGGGCCuu--GAGCCGcugGGCCG----GGCG- -5'
29938 5' -63.8 NC_006273.1 + 125257 0.67 0.641477
Target:  5'- uGCaCCGGGcgcggcgucagaGCgagcgUGGCGcguCCgGGCCCGCg -3'
miRNA:   3'- -UG-GGCCU------------UGa----GCCGCu--GGgCCGGGCG- -5'
29938 5' -63.8 NC_006273.1 + 131150 0.67 0.641477
Target:  5'- cGCCC-GAACaCGGCGGCgaGGUgCGCg -3'
miRNA:   3'- -UGGGcCUUGaGCCGCUGggCCGgGCG- -5'
29938 5' -63.8 NC_006273.1 + 38107 0.67 0.640544
Target:  5'- gGCCCGGGAagagauucuucucCcCGGCGcGCUCGgGCCgGCg -3'
miRNA:   3'- -UGGGCCUU-------------GaGCCGC-UGGGC-CGGgCG- -5'
29938 5' -63.8 NC_006273.1 + 206122 0.67 0.640544
Target:  5'- cACCCGGggUgUCGGCGuggGCaCGGacagguuCCCGCg -3'
miRNA:   3'- -UGGGCCuuG-AGCCGC---UGgGCC-------GGGCG- -5'
29938 5' -63.8 NC_006273.1 + 1933 0.67 0.632138
Target:  5'- cACCUGGuuuuuuuACUCGGaGGCCaCGG-CCGCc -3'
miRNA:   3'- -UGGGCCu------UGAGCCgCUGG-GCCgGGCG- -5'
29938 5' -63.8 NC_006273.1 + 45944 0.67 0.632138
Target:  5'- gACgaCGacGAGCUCcgucacaGCGACCCGGCgCCGCu -3'
miRNA:   3'- -UGg-GC--CUUGAGc------CGCUGGGCCG-GGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.