miRNA display CGI


Results 1 - 20 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29938 5' -63.8 NC_006273.1 + 295 0.67 0.622798
Target:  5'- cCCCGGGGC-CcGCGACUCcucccuugcGCCCGCg -3'
miRNA:   3'- uGGGCCUUGaGcCGCUGGGc--------CGGGCG- -5'
29938 5' -63.8 NC_006273.1 + 542 0.68 0.556981
Target:  5'- cCCCGcccCUCGGgGACCCagcacacGGCCCGg -3'
miRNA:   3'- uGGGCcuuGAGCCgCUGGG-------CCGGGCg -5'
29938 5' -63.8 NC_006273.1 + 592 0.74 0.27313
Target:  5'- cACCUaGGAgggugcgcGCUCGGgGACCCaGUCCGCg -3'
miRNA:   3'- -UGGG-CCU--------UGAGCCgCUGGGcCGGGCG- -5'
29938 5' -63.8 NC_006273.1 + 868 0.68 0.56708
Target:  5'- -gUCGGAGgUgucCGGCGGCCaUGGCCCaGCg -3'
miRNA:   3'- ugGGCCUUgA---GCCGCUGG-GCCGGG-CG- -5'
29938 5' -63.8 NC_006273.1 + 1445 0.66 0.724485
Target:  5'- gACCCGacGgUgGGCGACaaGGCCgGCc -3'
miRNA:   3'- -UGGGCcuUgAgCCGCUGggCCGGgCG- -5'
29938 5' -63.8 NC_006273.1 + 1505 0.7 0.469103
Target:  5'- uACCUGGcGCUgGGCG-CCgGGuUCCGCg -3'
miRNA:   3'- -UGGGCCuUGAgCCGCuGGgCC-GGGCG- -5'
29938 5' -63.8 NC_006273.1 + 1933 0.67 0.632138
Target:  5'- cACCUGGuuuuuuuACUCGGaGGCCaCGG-CCGCc -3'
miRNA:   3'- -UGGGCCu------UGAGCCgCUGG-GCCgGGCG- -5'
29938 5' -63.8 NC_006273.1 + 4793 0.71 0.427473
Target:  5'- -aCCGGGGCUUGGCGACCCuuccacgaCUGCu -3'
miRNA:   3'- ugGGCCUUGAGCCGCUGGGccg-----GGCG- -5'
29938 5' -63.8 NC_006273.1 + 5514 0.66 0.706326
Target:  5'- -aCUGGAACaccacgCGGUccGGCUCaGCCCGCg -3'
miRNA:   3'- ugGGCCUUGa-----GCCG--CUGGGcCGGGCG- -5'
29938 5' -63.8 NC_006273.1 + 13571 0.77 0.191443
Target:  5'- cGCCgGGuGCUCacccgccgGGCGGCCCGGgCCGCc -3'
miRNA:   3'- -UGGgCCuUGAG--------CCGCUGGGCCgGGCG- -5'
29938 5' -63.8 NC_006273.1 + 14064 0.7 0.495054
Target:  5'- cUCCGGuAACuaUCGGCGGCCgGGgCUGUg -3'
miRNA:   3'- uGGGCC-UUG--AGCCGCUGGgCCgGGCG- -5'
29938 5' -63.8 NC_006273.1 + 21346 0.72 0.388111
Target:  5'- aACCCGGGcucaccgcaguuGCUgccuuaCGGCGACCgucuggaggUGGCCUGCa -3'
miRNA:   3'- -UGGGCCU------------UGA------GCCGCUGG---------GCCGGGCG- -5'
29938 5' -63.8 NC_006273.1 + 21700 0.71 0.434806
Target:  5'- cACUCGGAccGCUCcuGCGACCUGGCUuucggauCGCg -3'
miRNA:   3'- -UGGGCCU--UGAGc-CGCUGGGCCGG-------GCG- -5'
29938 5' -63.8 NC_006273.1 + 25371 0.68 0.613464
Target:  5'- cCCCGGGAUccaagaGACCCGGCUgGCg -3'
miRNA:   3'- uGGGCCUUGagccg-CUGGGCCGGgCG- -5'
29938 5' -63.8 NC_006273.1 + 27482 0.66 0.715435
Target:  5'- cACCUGGuGCUC--CGACCUG-CCCGCc -3'
miRNA:   3'- -UGGGCCuUGAGccGCUGGGCcGGGCG- -5'
29938 5' -63.8 NC_006273.1 + 30039 0.67 0.660132
Target:  5'- aGCCCGGcggccaGACcacgGGCaacACCUGGCCUGCg -3'
miRNA:   3'- -UGGGCC------UUGag--CCGc--UGGGCCGGGCG- -5'
29938 5' -63.8 NC_006273.1 + 30592 0.7 0.452195
Target:  5'- uGCgCGaGAC-CGGCGGCaCCGGCgCCGCc -3'
miRNA:   3'- -UGgGCcUUGaGCCGCUG-GGCCG-GGCG- -5'
29938 5' -63.8 NC_006273.1 + 30682 0.73 0.30385
Target:  5'- cGCCuCGGGGCUcgcCGGCGACaCCcaaGGCCgGCa -3'
miRNA:   3'- -UGG-GCCUUGA---GCCGCUG-GG---CCGGgCG- -5'
29938 5' -63.8 NC_006273.1 + 33826 0.67 0.641477
Target:  5'- gACgCGGG--UUGGCacaGGCCCaGCCCGCg -3'
miRNA:   3'- -UGgGCCUugAGCCG---CUGGGcCGGGCG- -5'
29938 5' -63.8 NC_006273.1 + 34753 0.79 0.141666
Target:  5'- gACUCGcGGACUCGGUGcCCCGGCCCc- -3'
miRNA:   3'- -UGGGC-CUUGAGCCGCuGGGCCGGGcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.