miRNA display CGI


Results 1 - 20 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29938 5' -63.8 NC_006273.1 + 66770 0.7 0.495054
Target:  5'- gACCCGGGcagccgcgGCUCGGCgcuGACaCUGGCCUugGUa -3'
miRNA:   3'- -UGGGCCU--------UGAGCCG---CUG-GGCCGGG--CG- -5'
29938 5' -63.8 NC_006273.1 + 152603 0.7 0.459763
Target:  5'- cGCCagCGGGuguguCUCGGUGGCCCgcugcacGGCCgCGCg -3'
miRNA:   3'- -UGG--GCCUu----GAGCCGCUGGG-------CCGG-GCG- -5'
29938 5' -63.8 NC_006273.1 + 73735 0.7 0.460608
Target:  5'- cGCCaUGGGugGCggCGGCGGCCgaGGCCCGg -3'
miRNA:   3'- -UGG-GCCU--UGa-GCCGCUGGg-CCGGGCg -5'
29938 5' -63.8 NC_006273.1 + 68294 0.7 0.460608
Target:  5'- gGCCCGGAaagcGCUCaGCGACgaGGCCgaucUGCu -3'
miRNA:   3'- -UGGGCCU----UGAGcCGCUGggCCGG----GCG- -5'
29938 5' -63.8 NC_006273.1 + 129496 0.7 0.46825
Target:  5'- gGCgUCGGAGCUCGgggaaagcagcGCGACCCggagaauGGCCgGCg -3'
miRNA:   3'- -UG-GGCCUUGAGC-----------CGCUGGG-------CCGGgCG- -5'
29938 5' -63.8 NC_006273.1 + 196398 0.7 0.469103
Target:  5'- uACCUGGcGCUgGGCG-CCgGGuUCCGCg -3'
miRNA:   3'- -UGGGCCuUGAgCCGCuGGgCC-GGGCG- -5'
29938 5' -63.8 NC_006273.1 + 94575 0.7 0.469103
Target:  5'- gGCCCGGGaucccucgcuGCUccCGGCGACCuCcGCCgGCu -3'
miRNA:   3'- -UGGGCCU----------UGA--GCCGCUGG-GcCGGgCG- -5'
29938 5' -63.8 NC_006273.1 + 94376 0.7 0.477678
Target:  5'- cAUCCGGGGCcgUgGGCcgggcaccgGGCgCGGCCCGCu -3'
miRNA:   3'- -UGGGCCUUG--AgCCG---------CUGgGCCGGGCG- -5'
29938 5' -63.8 NC_006273.1 + 117705 0.7 0.486329
Target:  5'- uCCCGGGuggGgUCGGCGuuaCGaGCCCGCg -3'
miRNA:   3'- uGGGCCU---UgAGCCGCuggGC-CGGGCG- -5'
29938 5' -63.8 NC_006273.1 + 30592 0.7 0.452195
Target:  5'- uGCgCGaGAC-CGGCGGCaCCGGCgCCGCc -3'
miRNA:   3'- -UGgGCcUUGaGCCGCUG-GGCCG-GGCG- -5'
29938 5' -63.8 NC_006273.1 + 21700 0.71 0.434806
Target:  5'- cACUCGGAccGCUCcuGCGACCUGGCUuucggauCGCg -3'
miRNA:   3'- -UGGGCCU--UGAGc-CGCUGGGCCGG-------GCG- -5'
29938 5' -63.8 NC_006273.1 + 4793 0.71 0.427473
Target:  5'- -aCCGGGGCUUGGCGACCCuuccacgaCUGCu -3'
miRNA:   3'- ugGGCCUUGAGCCGCUGGGccg-----GGCG- -5'
29938 5' -63.8 NC_006273.1 + 221792 0.75 0.250388
Target:  5'- gGCCCuccAGCaCGGCGGCCCGGgCCGCc -3'
miRNA:   3'- -UGGGcc-UUGaGCCGCUGGGCCgGGCG- -5'
29938 5' -63.8 NC_006273.1 + 195485 0.74 0.27313
Target:  5'- cACCUaGGAgggugcgcGCUCGGgGACCCaGUCCGCg -3'
miRNA:   3'- -UGGG-CCU--------UGAGCCgCUGGGcCGGGCG- -5'
29938 5' -63.8 NC_006273.1 + 45872 0.74 0.2975
Target:  5'- gGCCCuGGAACUcucacacagcgCGGCGGCCgGG-CCGCc -3'
miRNA:   3'- -UGGG-CCUUGA-----------GCCGCUGGgCCgGGCG- -5'
29938 5' -63.8 NC_006273.1 + 94628 0.74 0.2975
Target:  5'- cGCCgCGGAACggaCGG-GACCCggGGUCCGCg -3'
miRNA:   3'- -UGG-GCCUUGa--GCCgCUGGG--CCGGGCG- -5'
29938 5' -63.8 NC_006273.1 + 30682 0.73 0.30385
Target:  5'- cGCCuCGGGGCUcgcCGGCGACaCCcaaGGCCgGCa -3'
miRNA:   3'- -UGG-GCCUUGA---GCCGCUG-GG---CCGGgCG- -5'
29938 5' -63.8 NC_006273.1 + 138148 0.73 0.310304
Target:  5'- gACgCGGcuCauggCGGCGGCCaCGGCCUGCg -3'
miRNA:   3'- -UGgGCCuuGa---GCCGCUGG-GCCGGGCG- -5'
29938 5' -63.8 NC_006273.1 + 72575 0.72 0.380529
Target:  5'- cCCCGcAGCUgCGGCGACCgCGGCugCCGUu -3'
miRNA:   3'- uGGGCcUUGA-GCCGCUGG-GCCG--GGCG- -5'
29938 5' -63.8 NC_006273.1 + 21346 0.72 0.388111
Target:  5'- aACCCGGGcucaccgcaguuGCUgccuuaCGGCGACCgucuggaggUGGCCUGCa -3'
miRNA:   3'- -UGGGCCU------------UGA------GCCGCUGG---------GCCGGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.