miRNA display CGI


Results 1 - 20 of 36 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29939 3' -56.6 NC_006273.1 + 183070 0.66 0.954424
Target:  5'- gGAcuGAUCCAGGC--GUCGGCguUGGGCAa -3'
miRNA:   3'- gCU--UUGGGUUCGgcCAGCCG--ACCUGU- -5'
29939 3' -56.6 NC_006273.1 + 36744 0.66 0.950534
Target:  5'- uCGGAGCUCAGaCCGGgcucCGGCgGGugGc -3'
miRNA:   3'- -GCUUUGGGUUcGGCCa---GCCGaCCugU- -5'
29939 3' -56.6 NC_006273.1 + 123078 0.66 0.950534
Target:  5'- gCGAAACgCCAc-UgGGUCGGCUGG-CGc -3'
miRNA:   3'- -GCUUUG-GGUucGgCCAGCCGACCuGU- -5'
29939 3' -56.6 NC_006273.1 + 21638 0.66 0.949326
Target:  5'- aCGAGACCCAcAGCCuGG-CGaccgagaccacggcGCUGGugGc -3'
miRNA:   3'- -GCUUUGGGU-UCGG-CCaGC--------------CGACCugU- -5'
29939 3' -56.6 NC_006273.1 + 189053 0.66 0.946429
Target:  5'- gGggGCCCGGaCCGG-CGGCguaGGCGg -3'
miRNA:   3'- gCuuUGGGUUcGGCCaGCCGac-CUGU- -5'
29939 3' -56.6 NC_006273.1 + 95209 0.66 0.946429
Target:  5'- ---cGCCC-AGCCGGggUCGGCgccucGGACc -3'
miRNA:   3'- gcuuUGGGuUCGGCC--AGCCGa----CCUGu -5'
29939 3' -56.6 NC_006273.1 + 86905 0.66 0.946429
Target:  5'- aGAAGgCCGc-CCGGUcCGGCUGGcGCGa -3'
miRNA:   3'- gCUUUgGGUucGGCCA-GCCGACC-UGU- -5'
29939 3' -56.6 NC_006273.1 + 116428 0.66 0.942106
Target:  5'- uCGGAcACCCAAGCCGGaCuGUcccGGGCAc -3'
miRNA:   3'- -GCUU-UGGGUUCGGCCaGcCGa--CCUGU- -5'
29939 3' -56.6 NC_006273.1 + 155238 0.66 0.942106
Target:  5'- aCGAGGCCgGGGCCaucgcgCGGCUGG-Cu -3'
miRNA:   3'- -GCUUUGGgUUCGGcca---GCCGACCuGu -5'
29939 3' -56.6 NC_006273.1 + 177529 0.66 0.939406
Target:  5'- gGggGCCCGcuGGCuCGGcgCGGCUguauuauuagacgccGGGCGu -3'
miRNA:   3'- gCuuUGGGU--UCG-GCCa-GCCGA---------------CCUGU- -5'
29939 3' -56.6 NC_006273.1 + 120489 0.66 0.937562
Target:  5'- cCGAAACCgGuGCCGGcCGcGCUagcGGGCu -3'
miRNA:   3'- -GCUUUGGgUuCGGCCaGC-CGA---CCUGu -5'
29939 3' -56.6 NC_006273.1 + 154418 0.67 0.922597
Target:  5'- aGGAGCUCugcGAGCUGGcCGacccGCUGGGCGa -3'
miRNA:   3'- gCUUUGGG---UUCGGCCaGC----CGACCUGU- -5'
29939 3' -56.6 NC_006273.1 + 189192 0.67 0.917163
Target:  5'- gGAGAUcggCCGAuGCUGGUCGGCguucccggcgUGGAUAc -3'
miRNA:   3'- gCUUUG---GGUU-CGGCCAGCCG----------ACCUGU- -5'
29939 3' -56.6 NC_006273.1 + 13588 0.67 0.911507
Target:  5'- cCGGgcGGCCCGGGCCGc-CGuGCUGGAgGg -3'
miRNA:   3'- -GCU--UUGGGUUCGGCcaGC-CGACCUgU- -5'
29939 3' -56.6 NC_006273.1 + 140172 0.67 0.911507
Target:  5'- uGGggUCCGAggcGCCGacccCGGCUGGGCGg -3'
miRNA:   3'- gCUuuGGGUU---CGGCca--GCCGACCUGU- -5'
29939 3' -56.6 NC_006273.1 + 19478 0.67 0.911507
Target:  5'- uGAAACgCCAacuccgugccAGCUGGcgCGGC-GGACAg -3'
miRNA:   3'- gCUUUG-GGU----------UCGGCCa-GCCGaCCUGU- -5'
29939 3' -56.6 NC_006273.1 + 160306 0.67 0.90563
Target:  5'- aCGggG-CCGGGCUGGUCGGg-GGAa- -3'
miRNA:   3'- -GCuuUgGGUUCGGCCAGCCgaCCUgu -5'
29939 3' -56.6 NC_006273.1 + 193172 0.68 0.895772
Target:  5'- cCGAAGCCCAcgcugcccguucggcGGCC-GUCGGCUauuacGACGa -3'
miRNA:   3'- -GCUUUGGGU---------------UCGGcCAGCCGAc----CUGU- -5'
29939 3' -56.6 NC_006273.1 + 134824 0.68 0.893221
Target:  5'- gGAAGCCUacaGAGUCGGgguggGGCcGGACAg -3'
miRNA:   3'- gCUUUGGG---UUCGGCCag---CCGaCCUGU- -5'
29939 3' -56.6 NC_006273.1 + 12853 0.68 0.889331
Target:  5'- -----aCCAGGCCGGcCGGCguuuucacuacgccgUGGACGa -3'
miRNA:   3'- gcuuugGGUUCGGCCaGCCG---------------ACCUGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.