miRNA display CGI


Results 1 - 20 of 36 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29939 3' -56.6 NC_006273.1 + 12853 0.68 0.889331
Target:  5'- -----aCCAGGCCGGcCGGCguuuucacuacgccgUGGACGa -3'
miRNA:   3'- gcuuugGGUUCGGCCaGCCG---------------ACCUGU- -5'
29939 3' -56.6 NC_006273.1 + 13588 0.67 0.911507
Target:  5'- cCGGgcGGCCCGGGCCGc-CGuGCUGGAgGg -3'
miRNA:   3'- -GCU--UUGGGUUCGGCcaGC-CGACCUgU- -5'
29939 3' -56.6 NC_006273.1 + 19478 0.67 0.911507
Target:  5'- uGAAACgCCAacuccgugccAGCUGGcgCGGC-GGACAg -3'
miRNA:   3'- gCUUUG-GGU----------UCGGCCa-GCCGaCCUGU- -5'
29939 3' -56.6 NC_006273.1 + 21638 0.66 0.949326
Target:  5'- aCGAGACCCAcAGCCuGG-CGaccgagaccacggcGCUGGugGc -3'
miRNA:   3'- -GCUUUGGGU-UCGG-CCaGC--------------CGACCugU- -5'
29939 3' -56.6 NC_006273.1 + 29319 0.68 0.886695
Target:  5'- uCGAGugCCGAcGCCGGU-GGa-GGACAu -3'
miRNA:   3'- -GCUUugGGUU-CGGCCAgCCgaCCUGU- -5'
29939 3' -56.6 NC_006273.1 + 36744 0.66 0.950534
Target:  5'- uCGGAGCUCAGaCCGGgcucCGGCgGGugGc -3'
miRNA:   3'- -GCUUUGGGUUcGGCCa---GCCGaCCugU- -5'
29939 3' -56.6 NC_006273.1 + 45005 0.68 0.886031
Target:  5'- uCGGGACCCGgcaucgcAGCCGuaGUCGGCUGuuCu -3'
miRNA:   3'- -GCUUUGGGU-------UCGGC--CAGCCGACcuGu -5'
29939 3' -56.6 NC_006273.1 + 46452 1.09 0.004373
Target:  5'- aCGAAACCCAAGCCGGUCGGCUGGACAc -3'
miRNA:   3'- -GCUUUGGGUUCGGCCAGCCGACCUGU- -5'
29939 3' -56.6 NC_006273.1 + 86905 0.66 0.946429
Target:  5'- aGAAGgCCGc-CCGGUcCGGCUGGcGCGa -3'
miRNA:   3'- gCUUUgGGUucGGCCA-GCCGACC-UGU- -5'
29939 3' -56.6 NC_006273.1 + 94324 0.69 0.835396
Target:  5'- cCGAGGCCCGGcGCCGGUCcguccGC-GGGCc -3'
miRNA:   3'- -GCUUUGGGUU-CGGCCAGc----CGaCCUGu -5'
29939 3' -56.6 NC_006273.1 + 95209 0.66 0.946429
Target:  5'- ---cGCCC-AGCCGGggUCGGCgccucGGACc -3'
miRNA:   3'- gcuuUGGGuUCGGCC--AGCCGa----CCUGu -5'
29939 3' -56.6 NC_006273.1 + 101740 0.7 0.793478
Target:  5'- uGAGGCUCAGacggcggucGCCGG-CGGCaUGGGCGc -3'
miRNA:   3'- gCUUUGGGUU---------CGGCCaGCCG-ACCUGU- -5'
29939 3' -56.6 NC_006273.1 + 105103 0.68 0.87996
Target:  5'- ---uGCUCgAGGCCGGcgCGGCUGcGACGg -3'
miRNA:   3'- gcuuUGGG-UUCGGCCa-GCCGAC-CUGU- -5'
29939 3' -56.6 NC_006273.1 + 113497 0.69 0.833796
Target:  5'- uCGGAugCCGuAGCCGG-CGGCggguugcccgggGGGCGc -3'
miRNA:   3'- -GCUUugGGU-UCGGCCaGCCGa-----------CCUGU- -5'
29939 3' -56.6 NC_006273.1 + 116428 0.66 0.942106
Target:  5'- uCGGAcACCCAAGCCGGaCuGUcccGGGCAc -3'
miRNA:   3'- -GCUU-UGGGUUCGGCCaGcCGa--CCUGU- -5'
29939 3' -56.6 NC_006273.1 + 120489 0.66 0.937562
Target:  5'- cCGAAACCgGuGCCGGcCGcGCUagcGGGCu -3'
miRNA:   3'- -GCUUUGGgUuCGGCCaGC-CGA---CCUGu -5'
29939 3' -56.6 NC_006273.1 + 123078 0.66 0.950534
Target:  5'- gCGAAACgCCAc-UgGGUCGGCUGG-CGc -3'
miRNA:   3'- -GCUUUG-GGUucGgCCAGCCGACCuGU- -5'
29939 3' -56.6 NC_006273.1 + 134824 0.68 0.893221
Target:  5'- gGAAGCCUacaGAGUCGGgguggGGCcGGACAg -3'
miRNA:   3'- gCUUUGGG---UUCGGCCag---CCGaCCUGU- -5'
29939 3' -56.6 NC_006273.1 + 140172 0.67 0.911507
Target:  5'- uGGggUCCGAggcGCCGacccCGGCUGGGCGg -3'
miRNA:   3'- gCUuuGGGUU---CGGCca--GCCGACCUGU- -5'
29939 3' -56.6 NC_006273.1 + 141155 0.69 0.830576
Target:  5'- cCGGAACCCugccgcggacugcGCCGGggggCGGC-GGGCAc -3'
miRNA:   3'- -GCUUUGGGuu-----------CGGCCa---GCCGaCCUGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.