Results 21 - 36 of 36 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29939 | 3' | -56.6 | NC_006273.1 | + | 145603 | 0.7 | 0.808159 |
Target: 5'- gGggGCCCGAGCgacggucugggcggCGGUCGuGgUGGugGg -3' miRNA: 3'- gCuuUGGGUUCG--------------GCCAGC-CgACCugU- -5' |
|||||||
29939 | 3' | -56.6 | NC_006273.1 | + | 153832 | 0.7 | 0.784656 |
Target: 5'- gCGAGACCCuGGUgGGUCGcGUggugGGACc -3' miRNA: 3'- -GCUUUGGGuUCGgCCAGC-CGa---CCUGu -5' |
|||||||
29939 | 3' | -56.6 | NC_006273.1 | + | 154418 | 0.67 | 0.922597 |
Target: 5'- aGGAGCUCugcGAGCUGGcCGacccGCUGGGCGa -3' miRNA: 3'- gCUUUGGG---UUCGGCCaGC----CGACCUGU- -5' |
|||||||
29939 | 3' | -56.6 | NC_006273.1 | + | 155238 | 0.66 | 0.942106 |
Target: 5'- aCGAGGCCgGGGCCaucgcgCGGCUGG-Cu -3' miRNA: 3'- -GCUUUGGgUUCGGcca---GCCGACCuGu -5' |
|||||||
29939 | 3' | -56.6 | NC_006273.1 | + | 160306 | 0.67 | 0.90563 |
Target: 5'- aCGggG-CCGGGCUGGUCGGg-GGAa- -3' miRNA: 3'- -GCuuUgGGUUCGGCCAGCCgaCCUgu -5' |
|||||||
29939 | 3' | -56.6 | NC_006273.1 | + | 160557 | 0.69 | 0.835396 |
Target: 5'- gCGGAGCCCGcGGCUGGUaCGaGCggUGGGCu -3' miRNA: 3'- -GCUUUGGGU-UCGGCCA-GC-CG--ACCUGu -5' |
|||||||
29939 | 3' | -56.6 | NC_006273.1 | + | 177529 | 0.66 | 0.939406 |
Target: 5'- gGggGCCCGcuGGCuCGGcgCGGCUguauuauuagacgccGGGCGu -3' miRNA: 3'- gCuuUGGGU--UCG-GCCa-GCCGA---------------CCUGU- -5' |
|||||||
29939 | 3' | -56.6 | NC_006273.1 | + | 183070 | 0.66 | 0.954424 |
Target: 5'- gGAcuGAUCCAGGC--GUCGGCguUGGGCAa -3' miRNA: 3'- gCU--UUGGGUUCGgcCAGCCG--ACCUGU- -5' |
|||||||
29939 | 3' | -56.6 | NC_006273.1 | + | 188374 | 0.7 | 0.802164 |
Target: 5'- gCGGucAUCCAAGUCGGgCGGCgucggGGACGc -3' miRNA: 3'- -GCUu-UGGGUUCGGCCaGCCGa----CCUGU- -5' |
|||||||
29939 | 3' | -56.6 | NC_006273.1 | + | 189053 | 0.66 | 0.946429 |
Target: 5'- gGggGCCCGGaCCGG-CGGCguaGGCGg -3' miRNA: 3'- gCuuUGGGUUcGGCCaGCCGac-CUGU- -5' |
|||||||
29939 | 3' | -56.6 | NC_006273.1 | + | 189192 | 0.67 | 0.917163 |
Target: 5'- gGAGAUcggCCGAuGCUGGUCGGCguucccggcgUGGAUAc -3' miRNA: 3'- gCUUUG---GGUU-CGGCCAGCCG----------ACCUGU- -5' |
|||||||
29939 | 3' | -56.6 | NC_006273.1 | + | 193172 | 0.68 | 0.895772 |
Target: 5'- cCGAAGCCCAcgcugcccguucggcGGCC-GUCGGCUauuacGACGa -3' miRNA: 3'- -GCUUUGGGU---------------UCGGcCAGCCGAc----CUGU- -5' |
|||||||
29939 | 3' | -56.6 | NC_006273.1 | + | 212539 | 0.69 | 0.856297 |
Target: 5'- uCGAGGCCaacucagucacauuCAAGCggcaGGUCGGUUGGAgGa -3' miRNA: 3'- -GCUUUGG--------------GUUCGg---CCAGCCGACCUgU- -5' |
|||||||
29939 | 3' | -56.6 | NC_006273.1 | + | 221803 | 0.69 | 0.843291 |
Target: 5'- aCGGcGGCCCGGGCCGccCGGCgGGugAg -3' miRNA: 3'- -GCU-UUGGGUUCGGCcaGCCGaCCugU- -5' |
|||||||
29939 | 3' | -56.6 | NC_006273.1 | + | 228707 | 0.68 | 0.886695 |
Target: 5'- -uGAACCCGGGUgGGUuguucggaaaCGGCgGGACGg -3' miRNA: 3'- gcUUUGGGUUCGgCCA----------GCCGaCCUGU- -5' |
|||||||
29939 | 3' | -56.6 | NC_006273.1 | + | 230487 | 0.71 | 0.719781 |
Target: 5'- gCGAAucgGCCgGcuGGUCGGUCGGCgcucGGACGg -3' miRNA: 3'- -GCUU---UGGgU--UCGGCCAGCCGa---CCUGU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home