Results 1 - 20 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29939 | 3' | -56.6 | NC_006273.1 | + | 101740 | 0.7 | 0.793478 |
Target: 5'- uGAGGCUCAGacggcggucGCCGG-CGGCaUGGGCGc -3' miRNA: 3'- gCUUUGGGUU---------CGGCCaGCCG-ACCUGU- -5' |
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29939 | 3' | -56.6 | NC_006273.1 | + | 123078 | 0.66 | 0.950534 |
Target: 5'- gCGAAACgCCAc-UgGGUCGGCUGG-CGc -3' miRNA: 3'- -GCUUUG-GGUucGgCCAGCCGACCuGU- -5' |
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29939 | 3' | -56.6 | NC_006273.1 | + | 21638 | 0.66 | 0.949326 |
Target: 5'- aCGAGACCCAcAGCCuGG-CGaccgagaccacggcGCUGGugGc -3' miRNA: 3'- -GCUUUGGGU-UCGG-CCaGC--------------CGACCugU- -5' |
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29939 | 3' | -56.6 | NC_006273.1 | + | 189053 | 0.66 | 0.946429 |
Target: 5'- gGggGCCCGGaCCGG-CGGCguaGGCGg -3' miRNA: 3'- gCuuUGGGUUcGGCCaGCCGac-CUGU- -5' |
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29939 | 3' | -56.6 | NC_006273.1 | + | 95209 | 0.66 | 0.946429 |
Target: 5'- ---cGCCC-AGCCGGggUCGGCgccucGGACc -3' miRNA: 3'- gcuuUGGGuUCGGCC--AGCCGa----CCUGu -5' |
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29939 | 3' | -56.6 | NC_006273.1 | + | 86905 | 0.66 | 0.946429 |
Target: 5'- aGAAGgCCGc-CCGGUcCGGCUGGcGCGa -3' miRNA: 3'- gCUUUgGGUucGGCCA-GCCGACC-UGU- -5' |
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29939 | 3' | -56.6 | NC_006273.1 | + | 154418 | 0.67 | 0.922597 |
Target: 5'- aGGAGCUCugcGAGCUGGcCGacccGCUGGGCGa -3' miRNA: 3'- gCUUUGGG---UUCGGCCaGC----CGACCUGU- -5' |
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29939 | 3' | -56.6 | NC_006273.1 | + | 189192 | 0.67 | 0.917163 |
Target: 5'- gGAGAUcggCCGAuGCUGGUCGGCguucccggcgUGGAUAc -3' miRNA: 3'- gCUUUG---GGUU-CGGCCAGCCG----------ACCUGU- -5' |
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29939 | 3' | -56.6 | NC_006273.1 | + | 19478 | 0.67 | 0.911507 |
Target: 5'- uGAAACgCCAacuccgugccAGCUGGcgCGGC-GGACAg -3' miRNA: 3'- gCUUUG-GGU----------UCGGCCa-GCCGaCCUGU- -5' |
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29939 | 3' | -56.6 | NC_006273.1 | + | 188374 | 0.7 | 0.802164 |
Target: 5'- gCGGucAUCCAAGUCGGgCGGCgucggGGACGc -3' miRNA: 3'- -GCUu-UGGGUUCGGCCaGCCGa----CCUGU- -5' |
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29939 | 3' | -56.6 | NC_006273.1 | + | 113497 | 0.69 | 0.833796 |
Target: 5'- uCGGAugCCGuAGCCGG-CGGCggguugcccgggGGGCGc -3' miRNA: 3'- -GCUUugGGU-UCGGCCaGCCGa-----------CCUGU- -5' |
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29939 | 3' | -56.6 | NC_006273.1 | + | 94324 | 0.69 | 0.835396 |
Target: 5'- cCGAGGCCCGGcGCCGGUCcguccGC-GGGCc -3' miRNA: 3'- -GCUUUGGGUU-CGGCCAGc----CGaCCUGu -5' |
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29939 | 3' | -56.6 | NC_006273.1 | + | 221803 | 0.69 | 0.843291 |
Target: 5'- aCGGcGGCCCGGGCCGccCGGCgGGugAg -3' miRNA: 3'- -GCU-UUGGGUUCGGCcaGCCGaCCugU- -5' |
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29939 | 3' | -56.6 | NC_006273.1 | + | 105103 | 0.68 | 0.87996 |
Target: 5'- ---uGCUCgAGGCCGGcgCGGCUGcGACGg -3' miRNA: 3'- gcuuUGGG-UUCGGCCa-GCCGAC-CUGU- -5' |
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29939 | 3' | -56.6 | NC_006273.1 | + | 134824 | 0.68 | 0.893221 |
Target: 5'- gGAAGCCUacaGAGUCGGgguggGGCcGGACAg -3' miRNA: 3'- gCUUUGGG---UUCGGCCag---CCGaCCUGU- -5' |
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29939 | 3' | -56.6 | NC_006273.1 | + | 183070 | 0.66 | 0.954424 |
Target: 5'- gGAcuGAUCCAGGC--GUCGGCguUGGGCAa -3' miRNA: 3'- gCU--UUGGGUUCGgcCAGCCG--ACCUGU- -5' |
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29939 | 3' | -56.6 | NC_006273.1 | + | 230487 | 0.71 | 0.719781 |
Target: 5'- gCGAAucgGCCgGcuGGUCGGUCGGCgcucGGACGg -3' miRNA: 3'- -GCUU---UGGgU--UCGGCCAGCCGa---CCUGU- -5' |
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29939 | 3' | -56.6 | NC_006273.1 | + | 153832 | 0.7 | 0.784656 |
Target: 5'- gCGAGACCCuGGUgGGUCGcGUggugGGACc -3' miRNA: 3'- -GCUUUGGGuUCGgCCAGC-CGa---CCUGu -5' |
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29939 | 3' | -56.6 | NC_006273.1 | + | 145603 | 0.7 | 0.808159 |
Target: 5'- gGggGCCCGAGCgacggucugggcggCGGUCGuGgUGGugGg -3' miRNA: 3'- gCuuUGGGUUCG--------------GCCAGC-CgACCugU- -5' |
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29939 | 3' | -56.6 | NC_006273.1 | + | 141155 | 0.69 | 0.830576 |
Target: 5'- cCGGAACCCugccgcggacugcGCCGGggggCGGC-GGGCAc -3' miRNA: 3'- -GCUUUGGGuu-----------CGGCCa---GCCGaCCUGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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