miRNA display CGI


Results 1 - 20 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29939 5' -56.8 NC_006273.1 + 95401 0.66 0.951188
Target:  5'- --gGUUCAGGCCCagucgaguuuUUCCCcGGcacGAACGCa -3'
miRNA:   3'- cugCGGGUCCGGG----------AAGGG-CU---UUUGCG- -5'
29939 5' -56.8 NC_006273.1 + 142373 0.66 0.951188
Target:  5'- --gGCCCGGGCCgCgUUCCGcAGcCGCu -3'
miRNA:   3'- cugCGGGUCCGG-GaAGGGCuUUuGCG- -5'
29939 5' -56.8 NC_006273.1 + 35322 0.66 0.951188
Target:  5'- aACaCCCAGGCCgCgggauauggaCUCGGAGGCGCc -3'
miRNA:   3'- cUGcGGGUCCGG-Gaa--------GGGCUUUUGCG- -5'
29939 5' -56.8 NC_006273.1 + 125139 0.66 0.948774
Target:  5'- cGGCGCCCaagucuccgucccacGGGCCCUagaCCGccAGGcCGCa -3'
miRNA:   3'- -CUGCGGG---------------UCCGGGAag-GGC--UUUuGCG- -5'
29939 5' -56.8 NC_006273.1 + 31201 0.66 0.947122
Target:  5'- cGGCGUCCAGGCUgc-CCUGGuuGcCGCu -3'
miRNA:   3'- -CUGCGGGUCCGGgaaGGGCUuuU-GCG- -5'
29939 5' -56.8 NC_006273.1 + 122422 0.66 0.947122
Target:  5'- cGGCGgaUCGcGGCCC-UCCC-AAAGCGCg -3'
miRNA:   3'- -CUGCg-GGU-CCGGGaAGGGcUUUUGCG- -5'
29939 5' -56.8 NC_006273.1 + 21758 0.66 0.947122
Target:  5'- gGACGCCCGauCCC-UCCaGGuuGCGCa -3'
miRNA:   3'- -CUGCGGGUccGGGaAGGgCUuuUGCG- -5'
29939 5' -56.8 NC_006273.1 + 140874 0.66 0.947122
Target:  5'- -cCGCUCGGGUCCc-CCCGGGc-CGCg -3'
miRNA:   3'- cuGCGGGUCCGGGaaGGGCUUuuGCG- -5'
29939 5' -56.8 NC_006273.1 + 194458 0.66 0.947122
Target:  5'- cGACGCCgCAcGcGUCCg-CCCGA--GCGCa -3'
miRNA:   3'- -CUGCGG-GU-C-CGGGaaGGGCUuuUGCG- -5'
29939 5' -56.8 NC_006273.1 + 119361 0.66 0.947122
Target:  5'- -cUGCgCCAGG-CCUUCCCGGGgcuggacuuuGAgGCg -3'
miRNA:   3'- cuGCG-GGUCCgGGAAGGGCUU----------UUgCG- -5'
29939 5' -56.8 NC_006273.1 + 37356 0.66 0.942838
Target:  5'- --gGCCgGGGCCCgUUuuGcauAAGCGCg -3'
miRNA:   3'- cugCGGgUCCGGGaAGggCu--UUUGCG- -5'
29939 5' -56.8 NC_006273.1 + 168561 0.66 0.942838
Target:  5'- aGugGUCUccugcGGCCUgagUCCCGAGAuaaGCa -3'
miRNA:   3'- -CugCGGGu----CCGGGa--AGGGCUUUug-CG- -5'
29939 5' -56.8 NC_006273.1 + 68228 0.66 0.94151
Target:  5'- cACGCCCccGCCCgccgacuuccagcggCCCGucuucAAAACGCu -3'
miRNA:   3'- cUGCGGGucCGGGaa-------------GGGC-----UUUUGCG- -5'
29939 5' -56.8 NC_006273.1 + 155162 0.66 0.938334
Target:  5'- cGCGCCCAGGUaggCCguuacugUCUGcAGGACGCc -3'
miRNA:   3'- cUGCGGGUCCG---GGaa-----GGGC-UUUUGCG- -5'
29939 5' -56.8 NC_006273.1 + 31889 0.66 0.938334
Target:  5'- uGCGCCCugcgucugcuGGCCUgUCCCGAcAGACc- -3'
miRNA:   3'- cUGCGGGu---------CCGGGaAGGGCU-UUUGcg -5'
29939 5' -56.8 NC_006273.1 + 197274 0.66 0.938334
Target:  5'- cGCGCCgGGGagaagaauCUCUUCCCGGGcccuGCGUu -3'
miRNA:   3'- cUGCGGgUCC--------GGGAAGGGCUUu---UGCG- -5'
29939 5' -56.8 NC_006273.1 + 55681 0.66 0.938334
Target:  5'- -uUGCgCAGGCCCU-CCUGcacGAAGcCGCg -3'
miRNA:   3'- cuGCGgGUCCGGGAaGGGC---UUUU-GCG- -5'
29939 5' -56.8 NC_006273.1 + 167514 0.66 0.938334
Target:  5'- --gGCCgcaGGGCCCgagaUCCCGGGAuucUGCg -3'
miRNA:   3'- cugCGGg--UCCGGGa---AGGGCUUUu--GCG- -5'
29939 5' -56.8 NC_006273.1 + 94564 0.66 0.938334
Target:  5'- ---cCCCGGGCuCCggCCCGGGAucccuCGCu -3'
miRNA:   3'- cugcGGGUCCG-GGaaGGGCUUUu----GCG- -5'
29939 5' -56.8 NC_006273.1 + 179932 0.66 0.938334
Target:  5'- cGGCGUgCcGGCCaccgCCCGAcucauAAACGCu -3'
miRNA:   3'- -CUGCGgGuCCGGgaa-GGGCU-----UUUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.