miRNA display CGI


Results 1 - 20 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29939 5' -56.8 NC_006273.1 + 94564 0.66 0.938334
Target:  5'- ---cCCCGGGCuCCggCCCGGGAucccuCGCu -3'
miRNA:   3'- cugcGGGUCCG-GGaaGGGCUUUu----GCG- -5'
29939 5' -56.8 NC_006273.1 + 82855 0.66 0.928155
Target:  5'- aGCGCCUGGGCgccgugcgcauagCCaacgcgCCCGAGGuACGCg -3'
miRNA:   3'- cUGCGGGUCCG-------------GGaa----GGGCUUU-UGCG- -5'
29939 5' -56.8 NC_006273.1 + 188477 0.66 0.928662
Target:  5'- cGCGCCUcGGCCU---CgGGAGACGCg -3'
miRNA:   3'- cUGCGGGuCCGGGaagGgCUUUUGCG- -5'
29939 5' -56.8 NC_006273.1 + 179932 0.66 0.938334
Target:  5'- cGGCGUgCcGGCCaccgCCCGAcucauAAACGCu -3'
miRNA:   3'- -CUGCGgGuCCGGgaa-GGGCU-----UUUGCG- -5'
29939 5' -56.8 NC_006273.1 + 68228 0.66 0.94151
Target:  5'- cACGCCCccGCCCgccgacuuccagcggCCCGucuucAAAACGCu -3'
miRNA:   3'- cUGCGGGucCGGGaa-------------GGGC-----UUUUGCG- -5'
29939 5' -56.8 NC_006273.1 + 97744 0.66 0.933609
Target:  5'- cGACGCCCGGGUgacggacgacggCaagacgUCCCGGAgaaGACGg -3'
miRNA:   3'- -CUGCGGGUCCG------------Gga----AGGGCUU---UUGCg -5'
29939 5' -56.8 NC_006273.1 + 31889 0.66 0.938334
Target:  5'- uGCGCCCugcgucugcuGGCCUgUCCCGAcAGACc- -3'
miRNA:   3'- cUGCGGGu---------CCGGGaAGGGCU-UUUGcg -5'
29939 5' -56.8 NC_006273.1 + 35322 0.66 0.951188
Target:  5'- aACaCCCAGGCCgCgggauauggaCUCGGAGGCGCc -3'
miRNA:   3'- cUGcGGGUCCGG-Gaa--------GGGCUUUUGCG- -5'
29939 5' -56.8 NC_006273.1 + 128426 0.66 0.933609
Target:  5'- uGCGCCCcGGCCUg---CGAAAGCGa -3'
miRNA:   3'- cUGCGGGuCCGGGaaggGCUUUUGCg -5'
29939 5' -56.8 NC_006273.1 + 87492 0.66 0.932148
Target:  5'- aGGCgGCCCGGGCgCCgaCgCGAAugucggaguuugccAGCGCg -3'
miRNA:   3'- -CUG-CGGGUCCG-GGaaGgGCUU--------------UUGCG- -5'
29939 5' -56.8 NC_006273.1 + 148654 0.66 0.928662
Target:  5'- uGGCGCCgGaGGCCgg-CCUGGAGgucuGCGCg -3'
miRNA:   3'- -CUGCGGgU-CCGGgaaGGGCUUU----UGCG- -5'
29939 5' -56.8 NC_006273.1 + 167514 0.66 0.938334
Target:  5'- --gGCCgcaGGGCCCgagaUCCCGGGAuucUGCg -3'
miRNA:   3'- cugCGGg--UCCGGGa---AGGGCUUUu--GCG- -5'
29939 5' -56.8 NC_006273.1 + 95401 0.66 0.951188
Target:  5'- --gGUUCAGGCCCagucgaguuuUUCCCcGGcacGAACGCa -3'
miRNA:   3'- cugCGGGUCCGGG----------AAGGG-CU---UUUGCG- -5'
29939 5' -56.8 NC_006273.1 + 168561 0.66 0.942838
Target:  5'- aGugGUCUccugcGGCCUgagUCCCGAGAuaaGCa -3'
miRNA:   3'- -CugCGGGu----CCGGGa--AGGGCUUUug-CG- -5'
29939 5' -56.8 NC_006273.1 + 21758 0.66 0.947122
Target:  5'- gGACGCCCGauCCC-UCCaGGuuGCGCa -3'
miRNA:   3'- -CUGCGGGUccGGGaAGGgCUuuUGCG- -5'
29939 5' -56.8 NC_006273.1 + 33441 0.66 0.938334
Target:  5'- cGACaGCCCcGGCgCagCuuGAAAACGUg -3'
miRNA:   3'- -CUG-CGGGuCCGgGaaGggCUUUUGCG- -5'
29939 5' -56.8 NC_006273.1 + 55681 0.66 0.938334
Target:  5'- -uUGCgCAGGCCCU-CCUGcacGAAGcCGCg -3'
miRNA:   3'- cuGCGgGUCCGGGAaGGGC---UUUU-GCG- -5'
29939 5' -56.8 NC_006273.1 + 220252 0.66 0.933609
Target:  5'- uGCGUCCcGGCCgCggacgUCCCGuc-ACGCc -3'
miRNA:   3'- cUGCGGGuCCGG-Ga----AGGGCuuuUGCG- -5'
29939 5' -56.8 NC_006273.1 + 90277 0.66 0.928662
Target:  5'- -uCGCCCGGGCUgc-CCCGcAGGugGUg -3'
miRNA:   3'- cuGCGGGUCCGGgaaGGGC-UUUugCG- -5'
29939 5' -56.8 NC_006273.1 + 142373 0.66 0.951188
Target:  5'- --gGCCCGGGCCgCgUUCCGcAGcCGCu -3'
miRNA:   3'- cugCGGGUCCGG-GaAGGGCuUUuGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.