miRNA display CGI


Results 21 - 40 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29939 5' -56.8 NC_006273.1 + 87492 0.66 0.932148
Target:  5'- aGGCgGCCCGGGCgCCgaCgCGAAugucggaguuugccAGCGCg -3'
miRNA:   3'- -CUG-CGGGUCCG-GGaaGgGCUU--------------UUGCG- -5'
29939 5' -56.8 NC_006273.1 + 35322 0.66 0.951188
Target:  5'- aACaCCCAGGCCgCgggauauggaCUCGGAGGCGCc -3'
miRNA:   3'- cUGcGGGUCCGG-Gaa--------GGGCUUUUGCG- -5'
29939 5' -56.8 NC_006273.1 + 31201 0.66 0.947122
Target:  5'- cGGCGUCCAGGCUgc-CCUGGuuGcCGCu -3'
miRNA:   3'- -CUGCGGGUCCGGgaaGGGCUuuU-GCG- -5'
29939 5' -56.8 NC_006273.1 + 182753 0.66 0.938334
Target:  5'- gGACGCCgAGGgCC-UCUCaGGAcuuGCGCg -3'
miRNA:   3'- -CUGCGGgUCCgGGaAGGG-CUUu--UGCG- -5'
29939 5' -56.8 NC_006273.1 + 155162 0.66 0.938334
Target:  5'- cGCGCCCAGGUaggCCguuacugUCUGcAGGACGCc -3'
miRNA:   3'- cUGCGGGUCCG---GGaa-----GGGC-UUUUGCG- -5'
29939 5' -56.8 NC_006273.1 + 122422 0.66 0.947122
Target:  5'- cGGCGgaUCGcGGCCC-UCCC-AAAGCGCg -3'
miRNA:   3'- -CUGCg-GGU-CCGGGaAGGGcUUUUGCG- -5'
29939 5' -56.8 NC_006273.1 + 125139 0.66 0.948774
Target:  5'- cGGCGCCCaagucuccgucccacGGGCCCUagaCCGccAGGcCGCa -3'
miRNA:   3'- -CUGCGGG---------------UCCGGGAag-GGC--UUUuGCG- -5'
29939 5' -56.8 NC_006273.1 + 188477 0.66 0.928662
Target:  5'- cGCGCCUcGGCCU---CgGGAGACGCg -3'
miRNA:   3'- cUGCGGGuCCGGGaagGgCUUUUGCG- -5'
29939 5' -56.8 NC_006273.1 + 90277 0.66 0.928662
Target:  5'- -uCGCCCGGGCUgc-CCCGcAGGugGUg -3'
miRNA:   3'- cuGCGGGUCCGGgaaGGGC-UUUugCG- -5'
29939 5' -56.8 NC_006273.1 + 119361 0.66 0.947122
Target:  5'- -cUGCgCCAGG-CCUUCCCGGGgcuggacuuuGAgGCg -3'
miRNA:   3'- cuGCG-GGUCCgGGAAGGGCUU----------UUgCG- -5'
29939 5' -56.8 NC_006273.1 + 148654 0.66 0.928662
Target:  5'- uGGCGCCgGaGGCCgg-CCUGGAGgucuGCGCg -3'
miRNA:   3'- -CUGCGGgU-CCGGgaaGGGCUUU----UGCG- -5'
29939 5' -56.8 NC_006273.1 + 197274 0.66 0.938334
Target:  5'- cGCGCCgGGGagaagaauCUCUUCCCGGGcccuGCGUu -3'
miRNA:   3'- cUGCGGgUCC--------GGGAAGGGCUUu---UGCG- -5'
29939 5' -56.8 NC_006273.1 + 37356 0.66 0.942838
Target:  5'- --gGCCgGGGCCCgUUuuGcauAAGCGCg -3'
miRNA:   3'- cugCGGgUCCGGGaAGggCu--UUUGCG- -5'
29939 5' -56.8 NC_006273.1 + 219744 0.67 0.906648
Target:  5'- --aGCCgCGGGCCCguaucgUCCUGAuGACcaGCg -3'
miRNA:   3'- cugCGG-GUCCGGGa-----AGGGCUuUUG--CG- -5'
29939 5' -56.8 NC_006273.1 + 61729 0.67 0.912484
Target:  5'- gGAUGCCCAGGaCgUga-CCGcGAGCGCc -3'
miRNA:   3'- -CUGCGGGUCC-GgGaagGGCuUUUGCG- -5'
29939 5' -56.8 NC_006273.1 + 152023 0.67 0.906648
Target:  5'- cGugGCCCgcGGGUCCU-CCCaccacGGCGCc -3'
miRNA:   3'- -CugCGGG--UCCGGGAaGGGcuu--UUGCG- -5'
29939 5' -56.8 NC_006273.1 + 32668 0.67 0.900594
Target:  5'- cGCGUCgCAGGCCCgagcggUUgCCGu-GACGCa -3'
miRNA:   3'- cUGCGG-GUCCGGG------AAgGGCuuUUGCG- -5'
29939 5' -56.8 NC_006273.1 + 119370 0.67 0.912484
Target:  5'- aGACGCCCGGGaUgUUUUCCGGGAAa-- -3'
miRNA:   3'- -CUGCGGGUCC-GgGAAGGGCUUUUgcg -5'
29939 5' -56.8 NC_006273.1 + 221804 0.67 0.923491
Target:  5'- cGGCgGCCCGGGCCg--CCCGGcggguGAGCa- -3'
miRNA:   3'- -CUG-CGGGUCCGGgaaGGGCU-----UUUGcg -5'
29939 5' -56.8 NC_006273.1 + 41934 0.67 0.894322
Target:  5'- cGGCGCCCuuGCCgCUaguUCCCGGuuucuugauGGGCGUa -3'
miRNA:   3'- -CUGCGGGucCGG-GA---AGGGCU---------UUUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.