miRNA display CGI


Results 1 - 20 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29939 5' -56.8 NC_006273.1 + 46486 1.1 0.003375
Target:  5'- uGACGCCCAGGCCCUUCCCGAAAACGCc -3'
miRNA:   3'- -CUGCGGGUCCGGGAAGGGCUUUUGCG- -5'
29939 5' -56.8 NC_006273.1 + 121712 0.81 0.252563
Target:  5'- cGCGUCCAGGCCagUCCCGAgaccgugAGACGCg -3'
miRNA:   3'- cUGCGGGUCCGGgaAGGGCU-------UUUGCG- -5'
29939 5' -56.8 NC_006273.1 + 39454 0.8 0.271217
Target:  5'- gGACGCCguGGCCCggcgUCgCCGuAGGCGCa -3'
miRNA:   3'- -CUGCGGguCCGGGa---AG-GGCuUUUGCG- -5'
29939 5' -56.8 NC_006273.1 + 234347 0.8 0.271217
Target:  5'- gGACGCCguGGCCCggcgUCgCCGuAGGCGCa -3'
miRNA:   3'- -CUGCGGguCCGGGa---AG-GGCuUUUGCG- -5'
29939 5' -56.8 NC_006273.1 + 212068 0.79 0.310439
Target:  5'- gGGCGCCCAGGCCg-UCCCG--GugGCc -3'
miRNA:   3'- -CUGCGGGUCCGGgaAGGGCuuUugCG- -5'
29939 5' -56.8 NC_006273.1 + 40615 0.78 0.377078
Target:  5'- cGGCuGCCCcGGCCUUUCaCCGGAGACGg -3'
miRNA:   3'- -CUG-CGGGuCCGGGAAG-GGCUUUUGCg -5'
29939 5' -56.8 NC_006273.1 + 47075 0.77 0.409635
Target:  5'- aACGCCCGGGCUCacgcaCCCugGAGGACGCg -3'
miRNA:   3'- cUGCGGGUCCGGGaa---GGG--CUUUUGCG- -5'
29939 5' -56.8 NC_006273.1 + 104111 0.76 0.452699
Target:  5'- --aGCaCCuGGCCCUcggugugCCCGAAGACGCu -3'
miRNA:   3'- cugCG-GGuCCGGGAa------GGGCUUUUGCG- -5'
29939 5' -56.8 NC_006273.1 + 37147 0.75 0.507446
Target:  5'- uGGCgGCCguGGCCUguggCCCGAAGAUGUa -3'
miRNA:   3'- -CUG-CGGguCCGGGaa--GGGCUUUUGCG- -5'
29939 5' -56.8 NC_006273.1 + 187550 0.74 0.543533
Target:  5'- cGGCGCCgAGGCCCagcgacgacaggUCCgCGAAccGGCGCu -3'
miRNA:   3'- -CUGCGGgUCCGGGa-----------AGG-GCUU--UUGCG- -5'
29939 5' -56.8 NC_006273.1 + 82524 0.74 0.574555
Target:  5'- uACGCCaacGGCCUUUCCCGc-GGCGCc -3'
miRNA:   3'- cUGCGGgu-CCGGGAAGGGCuuUUGCG- -5'
29939 5' -56.8 NC_006273.1 + 164469 0.74 0.574555
Target:  5'- aGGCGUCCAGGCaa--CCCGAGgccgGACGCu -3'
miRNA:   3'- -CUGCGGGUCCGggaaGGGCUU----UUGCG- -5'
29939 5' -56.8 NC_006273.1 + 153243 0.73 0.594153
Target:  5'- aGAUGCuUCuGGCCCUggCCCGucuGGACGCa -3'
miRNA:   3'- -CUGCG-GGuCCGGGAa-GGGCu--UUUGCG- -5'
29939 5' -56.8 NC_006273.1 + 30735 0.73 0.613855
Target:  5'- cGAcCGCCUAGuguGCCCUcgcugCCCGAGAACGg -3'
miRNA:   3'- -CU-GCGGGUC---CGGGAa----GGGCUUUUGCg -5'
29939 5' -56.8 NC_006273.1 + 107626 0.73 0.623729
Target:  5'- gGACugGCaCCGGGcCCCUUCCaCGAAcuGCGCa -3'
miRNA:   3'- -CUG--CG-GGUCC-GGGAAGG-GCUUu-UGCG- -5'
29939 5' -56.8 NC_006273.1 + 147903 0.73 0.633608
Target:  5'- cGGCGCCCGGGCCg--CCUGAGGAa-- -3'
miRNA:   3'- -CUGCGGGUCCGGgaaGGGCUUUUgcg -5'
29939 5' -56.8 NC_006273.1 + 169676 0.73 0.643487
Target:  5'- cGGCGCCguGGCCgUUgCCGcguuAGCGCc -3'
miRNA:   3'- -CUGCGGguCCGGgAAgGGCuu--UUGCG- -5'
29939 5' -56.8 NC_006273.1 + 124206 0.72 0.653357
Target:  5'- cGugGCCgaCGGGCCCgaUUCCGAAgguuggggucGACGCg -3'
miRNA:   3'- -CugCGG--GUCCGGGa-AGGGCUU----------UUGCG- -5'
29939 5' -56.8 NC_006273.1 + 152475 0.72 0.682841
Target:  5'- uGCGCCUccagccgcuccgAGcGCaCCUUCuuGAAGACGCg -3'
miRNA:   3'- cUGCGGG------------UC-CG-GGAAGggCUUUUGCG- -5'
29939 5' -56.8 NC_006273.1 + 93029 0.71 0.722526
Target:  5'- --gGCCCGGGCCCgaugccacggcgcugUCCUGAcuuuccGCGCg -3'
miRNA:   3'- cugCGGGUCCGGGa--------------AGGGCUuu----UGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.