Results 21 - 40 of 137 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
29939 | 5' | -56.8 | NC_006273.1 | + | 30098 | 0.71 | 0.740538 |
Target: 5'- aGACaGCCCAGGCCgaaCUCGGccguGAGCGCc -3' miRNA: 3'- -CUG-CGGGUCCGGgaaGGGCU----UUUGCG- -5' |
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29939 | 5' | -56.8 | NC_006273.1 | + | 112607 | 0.71 | 0.749894 |
Target: 5'- uGCGCCgAGcaGCCgUUgCCCGGGAACGUa -3' miRNA: 3'- cUGCGGgUC--CGGgAA-GGGCUUUUGCG- -5' |
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29939 | 5' | -56.8 | NC_006273.1 | + | 163671 | 0.71 | 0.749894 |
Target: 5'- cGACGUcggggUCGGGCCCggaacaauaCCCGAGGAgGCg -3' miRNA: 3'- -CUGCG-----GGUCCGGGaa-------GGGCUUUUgCG- -5' |
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29939 | 5' | -56.8 | NC_006273.1 | + | 37127 | 0.7 | 0.768308 |
Target: 5'- aACGCCgCAGGCCCUcauagUCgCGucgcACGCa -3' miRNA: 3'- cUGCGG-GUCCGGGA-----AGgGCuuu-UGCG- -5' |
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29939 | 5' | -56.8 | NC_006273.1 | + | 185486 | 0.7 | 0.768308 |
Target: 5'- aGCGCCCugGGGCCCUUCgUGGgcaAGAUGg -3' miRNA: 3'- cUGCGGG--UCCGGGAAGgGCU---UUUGCg -5' |
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29939 | 5' | -56.8 | NC_006273.1 | + | 151796 | 0.7 | 0.768308 |
Target: 5'- cGCGCCCAGGCUCauggagUCCuCGcgccgcGAGGCGUa -3' miRNA: 3'- cUGCGGGUCCGGGa-----AGG-GC------UUUUGCG- -5' |
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29939 | 5' | -56.8 | NC_006273.1 | + | 163859 | 0.7 | 0.786271 |
Target: 5'- -cCGCCggcgaGGGCCCUcguUCCuCGAGGACGg -3' miRNA: 3'- cuGCGGg----UCCGGGA---AGG-GCUUUUGCg -5' |
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29939 | 5' | -56.8 | NC_006273.1 | + | 67945 | 0.7 | 0.786271 |
Target: 5'- aGACGCagCAGGCCCUgcaacacgccgUCCaucAAGCGCa -3' miRNA: 3'- -CUGCGg-GUCCGGGA-----------AGGgcuUUUGCG- -5' |
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29939 | 5' | -56.8 | NC_006273.1 | + | 45768 | 0.7 | 0.786271 |
Target: 5'- aAUGUCCGuacaccGGCCCUUCCCGAc-ACGg -3' miRNA: 3'- cUGCGGGU------CCGGGAAGGGCUuuUGCg -5' |
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29939 | 5' | -56.8 | NC_006273.1 | + | 109950 | 0.7 | 0.795062 |
Target: 5'- uGGCGCCgGGGCUUUUgcuacgUCCG-AAACGCa -3' miRNA: 3'- -CUGCGGgUCCGGGAA------GGGCuUUUGCG- -5' |
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29939 | 5' | -56.8 | NC_006273.1 | + | 38995 | 0.7 | 0.795062 |
Target: 5'- cGGCGCCCAGcGCCagguacagUCCGuccuGCGCg -3' miRNA: 3'- -CUGCGGGUC-CGGgaa-----GGGCuuu-UGCG- -5' |
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29939 | 5' | -56.8 | NC_006273.1 | + | 233888 | 0.7 | 0.795062 |
Target: 5'- cGGCGCCCAGcGCCagguacagUCCGuccuGCGCg -3' miRNA: 3'- -CUGCGGGUC-CGGgaa-----GGGCuuu-UGCG- -5' |
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29939 | 5' | -56.8 | NC_006273.1 | + | 186216 | 0.7 | 0.803717 |
Target: 5'- uGACGUCuCAGGCU--UUCCGAAAcCGCg -3' miRNA: 3'- -CUGCGG-GUCCGGgaAGGGCUUUuGCG- -5' |
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29939 | 5' | -56.8 | NC_006273.1 | + | 59646 | 0.7 | 0.803717 |
Target: 5'- -cCGCCCGGGCUCUcgUCCUGuccgUGCa -3' miRNA: 3'- cuGCGGGUCCGGGA--AGGGCuuuuGCG- -5' |
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29939 | 5' | -56.8 | NC_006273.1 | + | 141004 | 0.7 | 0.803717 |
Target: 5'- cGCGCCCGGuGCCCggcccacggCCCcGGAugGUg -3' miRNA: 3'- cUGCGGGUC-CGGGaa-------GGGcUUUugCG- -5' |
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29939 | 5' | -56.8 | NC_006273.1 | + | 141450 | 0.7 | 0.803717 |
Target: 5'- cGCGCCUcccgcGGGUCCUggCCCGcgcauGCGCa -3' miRNA: 3'- cUGCGGG-----UCCGGGAa-GGGCuuu--UGCG- -5' |
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29939 | 5' | -56.8 | NC_006273.1 | + | 194490 | 0.69 | 0.812226 |
Target: 5'- cGGCGCCgGcGCCCagcacgCCCGAAaacAACGCc -3' miRNA: 3'- -CUGCGGgUcCGGGaa----GGGCUU---UUGCG- -5' |
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29939 | 5' | -56.8 | NC_006273.1 | + | 234197 | 0.69 | 0.812226 |
Target: 5'- cGGCGCCCAuGGCCUgguauuccagCuCCGucAGCGCc -3' miRNA: 3'- -CUGCGGGU-CCGGGaa--------G-GGCuuUUGCG- -5' |
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29939 | 5' | -56.8 | NC_006273.1 | + | 156718 | 0.69 | 0.812226 |
Target: 5'- gGAC-CCCGGcCCCUUCUCGcguGCGCg -3' miRNA: 3'- -CUGcGGGUCcGGGAAGGGCuuuUGCG- -5' |
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29939 | 5' | -56.8 | NC_006273.1 | + | 149343 | 0.69 | 0.812226 |
Target: 5'- cGACGaUCCGGGUCCcaccugucgugUUCaaGAGAGCGCg -3' miRNA: 3'- -CUGC-GGGUCCGGG-----------AAGggCUUUUGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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