miRNA display CGI


Results 21 - 40 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29939 5' -56.8 NC_006273.1 + 30098 0.71 0.740538
Target:  5'- aGACaGCCCAGGCCgaaCUCGGccguGAGCGCc -3'
miRNA:   3'- -CUG-CGGGUCCGGgaaGGGCU----UUUGCG- -5'
29939 5' -56.8 NC_006273.1 + 112607 0.71 0.749894
Target:  5'- uGCGCCgAGcaGCCgUUgCCCGGGAACGUa -3'
miRNA:   3'- cUGCGGgUC--CGGgAA-GGGCUUUUGCG- -5'
29939 5' -56.8 NC_006273.1 + 163671 0.71 0.749894
Target:  5'- cGACGUcggggUCGGGCCCggaacaauaCCCGAGGAgGCg -3'
miRNA:   3'- -CUGCG-----GGUCCGGGaa-------GGGCUUUUgCG- -5'
29939 5' -56.8 NC_006273.1 + 37127 0.7 0.768308
Target:  5'- aACGCCgCAGGCCCUcauagUCgCGucgcACGCa -3'
miRNA:   3'- cUGCGG-GUCCGGGA-----AGgGCuuu-UGCG- -5'
29939 5' -56.8 NC_006273.1 + 185486 0.7 0.768308
Target:  5'- aGCGCCCugGGGCCCUUCgUGGgcaAGAUGg -3'
miRNA:   3'- cUGCGGG--UCCGGGAAGgGCU---UUUGCg -5'
29939 5' -56.8 NC_006273.1 + 151796 0.7 0.768308
Target:  5'- cGCGCCCAGGCUCauggagUCCuCGcgccgcGAGGCGUa -3'
miRNA:   3'- cUGCGGGUCCGGGa-----AGG-GC------UUUUGCG- -5'
29939 5' -56.8 NC_006273.1 + 163859 0.7 0.786271
Target:  5'- -cCGCCggcgaGGGCCCUcguUCCuCGAGGACGg -3'
miRNA:   3'- cuGCGGg----UCCGGGA---AGG-GCUUUUGCg -5'
29939 5' -56.8 NC_006273.1 + 67945 0.7 0.786271
Target:  5'- aGACGCagCAGGCCCUgcaacacgccgUCCaucAAGCGCa -3'
miRNA:   3'- -CUGCGg-GUCCGGGA-----------AGGgcuUUUGCG- -5'
29939 5' -56.8 NC_006273.1 + 45768 0.7 0.786271
Target:  5'- aAUGUCCGuacaccGGCCCUUCCCGAc-ACGg -3'
miRNA:   3'- cUGCGGGU------CCGGGAAGGGCUuuUGCg -5'
29939 5' -56.8 NC_006273.1 + 109950 0.7 0.795062
Target:  5'- uGGCGCCgGGGCUUUUgcuacgUCCG-AAACGCa -3'
miRNA:   3'- -CUGCGGgUCCGGGAA------GGGCuUUUGCG- -5'
29939 5' -56.8 NC_006273.1 + 38995 0.7 0.795062
Target:  5'- cGGCGCCCAGcGCCagguacagUCCGuccuGCGCg -3'
miRNA:   3'- -CUGCGGGUC-CGGgaa-----GGGCuuu-UGCG- -5'
29939 5' -56.8 NC_006273.1 + 233888 0.7 0.795062
Target:  5'- cGGCGCCCAGcGCCagguacagUCCGuccuGCGCg -3'
miRNA:   3'- -CUGCGGGUC-CGGgaa-----GGGCuuu-UGCG- -5'
29939 5' -56.8 NC_006273.1 + 186216 0.7 0.803717
Target:  5'- uGACGUCuCAGGCU--UUCCGAAAcCGCg -3'
miRNA:   3'- -CUGCGG-GUCCGGgaAGGGCUUUuGCG- -5'
29939 5' -56.8 NC_006273.1 + 59646 0.7 0.803717
Target:  5'- -cCGCCCGGGCUCUcgUCCUGuccgUGCa -3'
miRNA:   3'- cuGCGGGUCCGGGA--AGGGCuuuuGCG- -5'
29939 5' -56.8 NC_006273.1 + 141004 0.7 0.803717
Target:  5'- cGCGCCCGGuGCCCggcccacggCCCcGGAugGUg -3'
miRNA:   3'- cUGCGGGUC-CGGGaa-------GGGcUUUugCG- -5'
29939 5' -56.8 NC_006273.1 + 141450 0.7 0.803717
Target:  5'- cGCGCCUcccgcGGGUCCUggCCCGcgcauGCGCa -3'
miRNA:   3'- cUGCGGG-----UCCGGGAa-GGGCuuu--UGCG- -5'
29939 5' -56.8 NC_006273.1 + 194490 0.69 0.812226
Target:  5'- cGGCGCCgGcGCCCagcacgCCCGAAaacAACGCc -3'
miRNA:   3'- -CUGCGGgUcCGGGaa----GGGCUU---UUGCG- -5'
29939 5' -56.8 NC_006273.1 + 234197 0.69 0.812226
Target:  5'- cGGCGCCCAuGGCCUgguauuccagCuCCGucAGCGCc -3'
miRNA:   3'- -CUGCGGGU-CCGGGaa--------G-GGCuuUUGCG- -5'
29939 5' -56.8 NC_006273.1 + 156718 0.69 0.812226
Target:  5'- gGAC-CCCGGcCCCUUCUCGcguGCGCg -3'
miRNA:   3'- -CUGcGGGUCcGGGAAGGGCuuuUGCG- -5'
29939 5' -56.8 NC_006273.1 + 149343 0.69 0.812226
Target:  5'- cGACGaUCCGGGUCCcaccugucgugUUCaaGAGAGCGCg -3'
miRNA:   3'- -CUGC-GGGUCCGGG-----------AAGggCUUUUGCG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.