miRNA display CGI


Results 21 - 40 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29939 5' -56.8 NC_006273.1 + 197274 0.66 0.938334
Target:  5'- cGCGCCgGGGagaagaauCUCUUCCCGGGcccuGCGUu -3'
miRNA:   3'- cUGCGGgUCC--------GGGAAGGGCUUu---UGCG- -5'
29939 5' -56.8 NC_006273.1 + 94564 0.66 0.938334
Target:  5'- ---cCCCGGGCuCCggCCCGGGAucccuCGCu -3'
miRNA:   3'- cugcGGGUCCG-GGaaGGGCUUUu----GCG- -5'
29939 5' -56.8 NC_006273.1 + 182753 0.66 0.938334
Target:  5'- gGACGCCgAGGgCC-UCUCaGGAcuuGCGCg -3'
miRNA:   3'- -CUGCGGgUCCgGGaAGGG-CUUu--UGCG- -5'
29939 5' -56.8 NC_006273.1 + 78680 0.66 0.937407
Target:  5'- aGGgGCCgGGGUCCgcgggcaccgcCgCCGGAGGCGCg -3'
miRNA:   3'- -CUgCGGgUCCGGGaa---------G-GGCUUUUGCG- -5'
29939 5' -56.8 NC_006273.1 + 91210 0.66 0.933609
Target:  5'- cGCGCuCCAGGgCCUcggcgaUCUCGGc-GCGCg -3'
miRNA:   3'- cUGCG-GGUCCgGGA------AGGGCUuuUGCG- -5'
29939 5' -56.8 NC_006273.1 + 128426 0.66 0.933609
Target:  5'- uGCGCCCcGGCCUg---CGAAAGCGa -3'
miRNA:   3'- cUGCGGGuCCGGGaaggGCUUUUGCg -5'
29939 5' -56.8 NC_006273.1 + 220252 0.66 0.933609
Target:  5'- uGCGUCCcGGCCgCggacgUCCCGuc-ACGCc -3'
miRNA:   3'- cUGCGGGuCCGG-Ga----AGGGCuuuUGCG- -5'
29939 5' -56.8 NC_006273.1 + 97744 0.66 0.933609
Target:  5'- cGACGCCCGGGUgacggacgacggCaagacgUCCCGGAgaaGACGg -3'
miRNA:   3'- -CUGCGGGUCCG------------Gga----AGGGCUU---UUGCg -5'
29939 5' -56.8 NC_006273.1 + 87492 0.66 0.932148
Target:  5'- aGGCgGCCCGGGCgCCgaCgCGAAugucggaguuugccAGCGCg -3'
miRNA:   3'- -CUG-CGGGUCCG-GGaaGgGCUU--------------UUGCG- -5'
29939 5' -56.8 NC_006273.1 + 148654 0.66 0.928662
Target:  5'- uGGCGCCgGaGGCCgg-CCUGGAGgucuGCGCg -3'
miRNA:   3'- -CUGCGGgU-CCGGgaaGGGCUUU----UGCG- -5'
29939 5' -56.8 NC_006273.1 + 188477 0.66 0.928662
Target:  5'- cGCGCCUcGGCCU---CgGGAGACGCg -3'
miRNA:   3'- cUGCGGGuCCGGGaagGgCUUUUGCG- -5'
29939 5' -56.8 NC_006273.1 + 90277 0.66 0.928662
Target:  5'- -uCGCCCGGGCUgc-CCCGcAGGugGUg -3'
miRNA:   3'- cuGCGGGUCCGGgaaGGGC-UUUugCG- -5'
29939 5' -56.8 NC_006273.1 + 82855 0.66 0.928155
Target:  5'- aGCGCCUGGGCgccgugcgcauagCCaacgcgCCCGAGGuACGCg -3'
miRNA:   3'- cUGCGGGUCCG-------------GGaa----GGGCUUU-UGCG- -5'
29939 5' -56.8 NC_006273.1 + 185435 0.67 0.923491
Target:  5'- cGGCuGCaCguGGCCUggCCCGA--ACGCu -3'
miRNA:   3'- -CUG-CG-GguCCGGGaaGGGCUuuUGCG- -5'
29939 5' -56.8 NC_006273.1 + 24586 0.67 0.923491
Target:  5'- gGGCGCCCgAGGUgCUccUCCUGGugccuGugGCc -3'
miRNA:   3'- -CUGCGGG-UCCGgGA--AGGGCUu----UugCG- -5'
29939 5' -56.8 NC_006273.1 + 39155 0.67 0.923491
Target:  5'- cGCGCCCAcGCCgUUCauCUGGcuGCGCg -3'
miRNA:   3'- cUGCGGGUcCGGgAAG--GGCUuuUGCG- -5'
29939 5' -56.8 NC_006273.1 + 234048 0.67 0.923491
Target:  5'- cGCGCCCAcGCCgUUCauCUGGcuGCGCg -3'
miRNA:   3'- cUGCGGGUcCGGgAAG--GGCUuuUGCG- -5'
29939 5' -56.8 NC_006273.1 + 141834 0.67 0.923491
Target:  5'- -uUGCCCAGGCUCacgUCgaUGAAGACGa -3'
miRNA:   3'- cuGCGGGUCCGGGa--AGg-GCUUUUGCg -5'
29939 5' -56.8 NC_006273.1 + 221804 0.67 0.923491
Target:  5'- cGGCgGCCCGGGCCg--CCCGGcggguGAGCa- -3'
miRNA:   3'- -CUG-CGGGUCCGGgaaGGGCU-----UUUGcg -5'
29939 5' -56.8 NC_006273.1 + 146808 0.67 0.923491
Target:  5'- cGGCGCCCAuGGCCg--CCacuguGGCGCg -3'
miRNA:   3'- -CUGCGGGU-CCGGgaaGGgcuu-UUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.