miRNA display CGI


Results 41 - 60 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29939 5' -56.8 NC_006273.1 + 193349 0.67 0.918099
Target:  5'- cACGUaaaCCGGGCgCC-UCCCGGAGGCu- -3'
miRNA:   3'- cUGCG---GGUCCG-GGaAGGGCUUUUGcg -5'
29939 5' -56.8 NC_006273.1 + 32140 0.67 0.918099
Target:  5'- --aG-CCAGGUCCccCCCGAcGAACGCg -3'
miRNA:   3'- cugCgGGUCCGGGaaGGGCU-UUUGCG- -5'
29939 5' -56.8 NC_006273.1 + 21707 0.67 0.918099
Target:  5'- -uCGCCgCAGGCCUUUgUCG---GCGCg -3'
miRNA:   3'- cuGCGG-GUCCGGGAAgGGCuuuUGCG- -5'
29939 5' -56.8 NC_006273.1 + 137405 0.67 0.912484
Target:  5'- gGACGCCUgcgacguuGGCUCUcgcagCCCGAGGuguGCGUg -3'
miRNA:   3'- -CUGCGGGu-------CCGGGAa----GGGCUUU---UGCG- -5'
29939 5' -56.8 NC_006273.1 + 119370 0.67 0.912484
Target:  5'- aGACGCCCGGGaUgUUUUCCGGGAAa-- -3'
miRNA:   3'- -CUGCGGGUCC-GgGAAGGGCUUUUgcg -5'
29939 5' -56.8 NC_006273.1 + 91440 0.67 0.912484
Target:  5'- --aGCCgCGGGCCCca-CCGGcgcuAGCGCg -3'
miRNA:   3'- cugCGG-GUCCGGGaagGGCUu---UUGCG- -5'
29939 5' -56.8 NC_006273.1 + 61729 0.67 0.912484
Target:  5'- gGAUGCCCAGGaCgUga-CCGcGAGCGCc -3'
miRNA:   3'- -CUGCGGGUCC-GgGaagGGCuUUUGCG- -5'
29939 5' -56.8 NC_006273.1 + 93931 0.67 0.912484
Target:  5'- cAUGCgCGGGCCaggaCCCGcggGAGGCGCg -3'
miRNA:   3'- cUGCGgGUCCGGgaa-GGGC---UUUUGCG- -5'
29939 5' -56.8 NC_006273.1 + 29500 0.67 0.906648
Target:  5'- uGACGguuCCCAGGCCgagaacgcgCaUUCCGAAAGCGg -3'
miRNA:   3'- -CUGC---GGGUCCGG---------GaAGGGCUUUUGCg -5'
29939 5' -56.8 NC_006273.1 + 219744 0.67 0.906648
Target:  5'- --aGCCgCGGGCCCguaucgUCCUGAuGACcaGCg -3'
miRNA:   3'- cugCGG-GUCCGGGa-----AGGGCUuUUG--CG- -5'
29939 5' -56.8 NC_006273.1 + 136073 0.67 0.906648
Target:  5'- cGACGCaCC-GGCCUccgacgaCgCCGAGGACGCc -3'
miRNA:   3'- -CUGCG-GGuCCGGGaa-----G-GGCUUUUGCG- -5'
29939 5' -56.8 NC_006273.1 + 152023 0.67 0.906648
Target:  5'- cGugGCCCgcGGGUCCU-CCCaccacGGCGCc -3'
miRNA:   3'- -CugCGGG--UCCGGGAaGGGcuu--UUGCG- -5'
29939 5' -56.8 NC_006273.1 + 158777 0.67 0.906648
Target:  5'- cGACGCCgcuCAGGCCgUgauagUCCGAGu-CGCc -3'
miRNA:   3'- -CUGCGG---GUCCGGgAa----GGGCUUuuGCG- -5'
29939 5' -56.8 NC_006273.1 + 201955 0.67 0.906648
Target:  5'- uGCGCCgGGGCugucgcgcgccgCCgacgCCCGAGGcgguGCGCg -3'
miRNA:   3'- cUGCGGgUCCG------------GGaa--GGGCUUU----UGCG- -5'
29939 5' -56.8 NC_006273.1 + 71804 0.67 0.906648
Target:  5'- cGCGCacagCAGGCCgUgCCCGugcgaaguGAGACGCa -3'
miRNA:   3'- cUGCGg---GUCCGGgAaGGGC--------UUUUGCG- -5'
29939 5' -56.8 NC_006273.1 + 119907 0.67 0.900594
Target:  5'- -cCGCCCGcGCCCUUCauaUGccGACGCu -3'
miRNA:   3'- cuGCGGGUcCGGGAAGg--GCuuUUGCG- -5'
29939 5' -56.8 NC_006273.1 + 32668 0.67 0.900594
Target:  5'- cGCGUCgCAGGCCCgagcggUUgCCGu-GACGCa -3'
miRNA:   3'- cUGCGG-GUCCGGG------AAgGGCuuUUGCG- -5'
29939 5' -56.8 NC_006273.1 + 149572 0.67 0.900594
Target:  5'- cGGCGgCCGGGCCCg--UgGAGGAgGCa -3'
miRNA:   3'- -CUGCgGGUCCGGGaagGgCUUUUgCG- -5'
29939 5' -56.8 NC_006273.1 + 76582 0.67 0.900594
Target:  5'- aGCGCCCA--CCUcgCCCGGAGGCGa -3'
miRNA:   3'- cUGCGGGUccGGGaaGGGCUUUUGCg -5'
29939 5' -56.8 NC_006273.1 + 206464 0.67 0.894322
Target:  5'- cGugGCCCuGGUCUggCCCaAAGACcGCu -3'
miRNA:   3'- -CugCGGGuCCGGGaaGGGcUUUUG-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.