miRNA display CGI


Results 1 - 20 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29939 5' -56.8 NC_006273.1 + 4926 0.67 0.894322
Target:  5'- -cCGCCgGGGCU--UCUgGAGAACGCc -3'
miRNA:   3'- cuGCGGgUCCGGgaAGGgCUUUUGCG- -5'
29939 5' -56.8 NC_006273.1 + 12596 0.67 0.894322
Target:  5'- aGGCGUCU-GGCCCUUCaucuguaUGGAGACGg -3'
miRNA:   3'- -CUGCGGGuCCGGGAAGg------GCUUUUGCg -5'
29939 5' -56.8 NC_006273.1 + 18053 0.68 0.887838
Target:  5'- uGCGCgaaCAGGCCgCUaUCCCGcAGAuuuACGCa -3'
miRNA:   3'- cUGCGg--GUCCGG-GA-AGGGC-UUU---UGCG- -5'
29939 5' -56.8 NC_006273.1 + 21707 0.67 0.918099
Target:  5'- -uCGCCgCAGGCCUUUgUCG---GCGCg -3'
miRNA:   3'- cuGCGG-GUCCGGGAAgGGCuuuUGCG- -5'
29939 5' -56.8 NC_006273.1 + 21758 0.66 0.947122
Target:  5'- gGACGCCCGauCCC-UCCaGGuuGCGCa -3'
miRNA:   3'- -CUGCGGGUccGGGaAGGgCUuuUGCG- -5'
29939 5' -56.8 NC_006273.1 + 24586 0.67 0.923491
Target:  5'- gGGCGCCCgAGGUgCUccUCCUGGugccuGugGCc -3'
miRNA:   3'- -CUGCGGG-UCCGgGA--AGGGCUu----UugCG- -5'
29939 5' -56.8 NC_006273.1 + 27053 0.68 0.867139
Target:  5'- cGGCGCaaGGGCCggcgagCCCGAAAguccauGCGCa -3'
miRNA:   3'- -CUGCGggUCCGGgaa---GGGCUUU------UGCG- -5'
29939 5' -56.8 NC_006273.1 + 29500 0.67 0.906648
Target:  5'- uGACGguuCCCAGGCCgagaacgcgCaUUCCGAAAGCGg -3'
miRNA:   3'- -CUGC---GGGUCCGG---------GaAGGGCUUUUGCg -5'
29939 5' -56.8 NC_006273.1 + 30098 0.71 0.740538
Target:  5'- aGACaGCCCAGGCCgaaCUCGGccguGAGCGCc -3'
miRNA:   3'- -CUG-CGGGUCCGGgaaGGGCU----UUUGCG- -5'
29939 5' -56.8 NC_006273.1 + 30735 0.73 0.613855
Target:  5'- cGAcCGCCUAGuguGCCCUcgcugCCCGAGAACGg -3'
miRNA:   3'- -CU-GCGGGUC---CGGGAa----GGGCUUUUGCg -5'
29939 5' -56.8 NC_006273.1 + 31201 0.66 0.947122
Target:  5'- cGGCGUCCAGGCUgc-CCUGGuuGcCGCu -3'
miRNA:   3'- -CUGCGGGUCCGGgaaGGGCUuuU-GCG- -5'
29939 5' -56.8 NC_006273.1 + 31889 0.66 0.938334
Target:  5'- uGCGCCCugcgucugcuGGCCUgUCCCGAcAGACc- -3'
miRNA:   3'- cUGCGGGu---------CCGGGaAGGGCU-UUUGcg -5'
29939 5' -56.8 NC_006273.1 + 32140 0.67 0.918099
Target:  5'- --aG-CCAGGUCCccCCCGAcGAACGCg -3'
miRNA:   3'- cugCgGGUCCGGGaaGGGCU-UUUGCG- -5'
29939 5' -56.8 NC_006273.1 + 32668 0.67 0.900594
Target:  5'- cGCGUCgCAGGCCCgagcggUUgCCGu-GACGCa -3'
miRNA:   3'- cUGCGG-GUCCGGG------AAgGGCuuUUGCG- -5'
29939 5' -56.8 NC_006273.1 + 33441 0.66 0.938334
Target:  5'- cGACaGCCCcGGCgCagCuuGAAAACGUg -3'
miRNA:   3'- -CUG-CGGGuCCGgGaaGggCUUUUGCG- -5'
29939 5' -56.8 NC_006273.1 + 35322 0.66 0.951188
Target:  5'- aACaCCCAGGCCgCgggauauggaCUCGGAGGCGCc -3'
miRNA:   3'- cUGcGGGUCCGG-Gaa--------GGGCUUUUGCG- -5'
29939 5' -56.8 NC_006273.1 + 36598 0.69 0.828781
Target:  5'- uGGCGUCCGGGCUCggugaccUCUCGGucGGCGUg -3'
miRNA:   3'- -CUGCGGGUCCGGGa------AGGGCUu-UUGCG- -5'
29939 5' -56.8 NC_006273.1 + 37127 0.7 0.768308
Target:  5'- aACGCCgCAGGCCCUcauagUCgCGucgcACGCa -3'
miRNA:   3'- cUGCGG-GUCCGGGA-----AGgGCuuu-UGCG- -5'
29939 5' -56.8 NC_006273.1 + 37147 0.75 0.507446
Target:  5'- uGGCgGCCguGGCCUguggCCCGAAGAUGUa -3'
miRNA:   3'- -CUG-CGGguCCGGGaa--GGGCUUUUGCG- -5'
29939 5' -56.8 NC_006273.1 + 37356 0.66 0.942838
Target:  5'- --gGCCgGGGCCCgUUuuGcauAAGCGCg -3'
miRNA:   3'- cugCGGgUCCGGGaAGggCu--UUUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.