miRNA display CGI


Results 21 - 40 of 137 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29939 5' -56.8 NC_006273.1 + 38995 0.7 0.795062
Target:  5'- cGGCGCCCAGcGCCagguacagUCCGuccuGCGCg -3'
miRNA:   3'- -CUGCGGGUC-CGGgaa-----GGGCuuu-UGCG- -5'
29939 5' -56.8 NC_006273.1 + 39155 0.67 0.923491
Target:  5'- cGCGCCCAcGCCgUUCauCUGGcuGCGCg -3'
miRNA:   3'- cUGCGGGUcCGGgAAG--GGCUuuUGCG- -5'
29939 5' -56.8 NC_006273.1 + 39304 0.69 0.812226
Target:  5'- cGGCGCCCAuGGCCUgguauuccagCuCCGucAGCGCc -3'
miRNA:   3'- -CUGCGGGU-CCGGGaa--------G-GGCuuUUGCG- -5'
29939 5' -56.8 NC_006273.1 + 39454 0.8 0.271217
Target:  5'- gGACGCCguGGCCCggcgUCgCCGuAGGCGCa -3'
miRNA:   3'- -CUGCGGguCCGGGa---AG-GGCuUUUGCG- -5'
29939 5' -56.8 NC_006273.1 + 40615 0.78 0.377078
Target:  5'- cGGCuGCCCcGGCCUUUCaCCGGAGACGg -3'
miRNA:   3'- -CUG-CGGGuCCGGGAAG-GGCUUUUGCg -5'
29939 5' -56.8 NC_006273.1 + 41934 0.67 0.894322
Target:  5'- cGGCGCCCuuGCCgCUaguUCCCGGuuucuugauGGGCGUa -3'
miRNA:   3'- -CUGCGGGucCGG-GA---AGGGCU---------UUUGCG- -5'
29939 5' -56.8 NC_006273.1 + 43965 0.68 0.881143
Target:  5'- aGCGCCCAGGCgaUCUcgcgCUCGAcGACGg -3'
miRNA:   3'- cUGCGGGUCCG--GGAa---GGGCUuUUGCg -5'
29939 5' -56.8 NC_006273.1 + 45510 0.68 0.887838
Target:  5'- cGAUGCCCGgcGGUCCg-CCCGA---CGCg -3'
miRNA:   3'- -CUGCGGGU--CCGGGaaGGGCUuuuGCG- -5'
29939 5' -56.8 NC_006273.1 + 45768 0.7 0.786271
Target:  5'- aAUGUCCGuacaccGGCCCUUCCCGAc-ACGg -3'
miRNA:   3'- cUGCGGGU------CCGGGAAGGGCUuuUGCg -5'
29939 5' -56.8 NC_006273.1 + 46486 1.1 0.003375
Target:  5'- uGACGCCCAGGCCCUUCCCGAAAACGCc -3'
miRNA:   3'- -CUGCGGGUCCGGGAAGGGCUUUUGCG- -5'
29939 5' -56.8 NC_006273.1 + 47075 0.77 0.409635
Target:  5'- aACGCCCGGGCUCacgcaCCCugGAGGACGCg -3'
miRNA:   3'- cUGCGGGUCCGGGaa---GGG--CUUUUGCG- -5'
29939 5' -56.8 NC_006273.1 + 55681 0.66 0.938334
Target:  5'- -uUGCgCAGGCCCU-CCUGcacGAAGcCGCg -3'
miRNA:   3'- cuGCGgGUCCGGGAaGGGC---UUUU-GCG- -5'
29939 5' -56.8 NC_006273.1 + 57039 0.68 0.874242
Target:  5'- aGGCGUCCGcGGCCCgcgagcgcaUgaaacaugaUCCUGAGAACGUc -3'
miRNA:   3'- -CUGCGGGU-CCGGG---------A---------AGGGCUUUUGCG- -5'
29939 5' -56.8 NC_006273.1 + 59646 0.7 0.803717
Target:  5'- -cCGCCCGGGCUCUcgUCCUGuccgUGCa -3'
miRNA:   3'- cuGCGGGUCCGGGA--AGGGCuuuuGCG- -5'
29939 5' -56.8 NC_006273.1 + 61254 0.66 0.938334
Target:  5'- --gGCCCAGGUCCagCCacugcAGCGCg -3'
miRNA:   3'- cugCGGGUCCGGGaaGGgcuu-UUGCG- -5'
29939 5' -56.8 NC_006273.1 + 61729 0.67 0.912484
Target:  5'- gGAUGCCCAGGaCgUga-CCGcGAGCGCc -3'
miRNA:   3'- -CUGCGGGUCC-GgGaagGGCuUUUGCG- -5'
29939 5' -56.8 NC_006273.1 + 67945 0.7 0.786271
Target:  5'- aGACGCagCAGGCCCUgcaacacgccgUCCaucAAGCGCa -3'
miRNA:   3'- -CUGCGg-GUCCGGGA-----------AGGgcuUUUGCG- -5'
29939 5' -56.8 NC_006273.1 + 68228 0.66 0.94151
Target:  5'- cACGCCCccGCCCgccgacuuccagcggCCCGucuucAAAACGCu -3'
miRNA:   3'- cUGCGGGucCGGGaa-------------GGGC-----UUUUGCG- -5'
29939 5' -56.8 NC_006273.1 + 71804 0.67 0.906648
Target:  5'- cGCGCacagCAGGCCgUgCCCGugcgaaguGAGACGCa -3'
miRNA:   3'- cUGCGg---GUCCGGgAaGGGC--------UUUUGCG- -5'
29939 5' -56.8 NC_006273.1 + 76582 0.67 0.900594
Target:  5'- aGCGCCCA--CCUcgCCCGGAGGCGa -3'
miRNA:   3'- cUGCGGGUccGGGaaGGGCUUUUGCg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.