miRNA display CGI


Results 1 - 20 of 137 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29939 5' -56.8 NC_006273.1 + 234428 0.69 0.812226
Target:  5'- cGGCGCCgGcGCCCagcacgCCCGAAaacAACGCc -3'
miRNA:   3'- -CUGCGGgUcCGGGaa----GGGCUU---UUGCG- -5'
29939 5' -56.8 NC_006273.1 + 234347 0.8 0.271217
Target:  5'- gGACGCCguGGCCCggcgUCgCCGuAGGCGCa -3'
miRNA:   3'- -CUGCGGguCCGGGa---AG-GGCuUUUGCG- -5'
29939 5' -56.8 NC_006273.1 + 234197 0.69 0.812226
Target:  5'- cGGCGCCCAuGGCCUgguauuccagCuCCGucAGCGCc -3'
miRNA:   3'- -CUGCGGGU-CCGGGaa--------G-GGCuuUUGCG- -5'
29939 5' -56.8 NC_006273.1 + 234048 0.67 0.923491
Target:  5'- cGCGCCCAcGCCgUUCauCUGGcuGCGCg -3'
miRNA:   3'- cUGCGGGUcCGGgAAG--GGCUuuUGCG- -5'
29939 5' -56.8 NC_006273.1 + 233888 0.7 0.795062
Target:  5'- cGGCGCCCAGcGCCagguacagUCCGuccuGCGCg -3'
miRNA:   3'- -CUGCGGGUC-CGGgaa-----GGGCuuu-UGCG- -5'
29939 5' -56.8 NC_006273.1 + 221804 0.67 0.923491
Target:  5'- cGGCgGCCCGGGCCg--CCCGGcggguGAGCa- -3'
miRNA:   3'- -CUG-CGGGUCCGGgaaGGGCU-----UUUGcg -5'
29939 5' -56.8 NC_006273.1 + 220252 0.66 0.933609
Target:  5'- uGCGUCCcGGCCgCggacgUCCCGuc-ACGCc -3'
miRNA:   3'- cUGCGGGuCCGG-Ga----AGGGCuuuUGCG- -5'
29939 5' -56.8 NC_006273.1 + 219744 0.67 0.906648
Target:  5'- --aGCCgCGGGCCCguaucgUCCUGAuGACcaGCg -3'
miRNA:   3'- cugCGG-GUCCGGGa-----AGGGCUuUUG--CG- -5'
29939 5' -56.8 NC_006273.1 + 212068 0.79 0.310439
Target:  5'- gGGCGCCCAGGCCg-UCCCG--GugGCc -3'
miRNA:   3'- -CUGCGGGUCCGGgaAGGGCuuUugCG- -5'
29939 5' -56.8 NC_006273.1 + 209453 0.69 0.836812
Target:  5'- --aGCCaGGGCCgCUUCgUGGAAAUGCg -3'
miRNA:   3'- cugCGGgUCCGG-GAAGgGCUUUUGCG- -5'
29939 5' -56.8 NC_006273.1 + 206464 0.67 0.894322
Target:  5'- cGugGCCCuGGUCUggCCCaAAGACcGCu -3'
miRNA:   3'- -CugCGGGuCCGGGaaGGGcUUUUG-CG- -5'
29939 5' -56.8 NC_006273.1 + 205229 0.68 0.887838
Target:  5'- aACGCCCAucGGCg--UCCCGGAAuCGUa -3'
miRNA:   3'- cUGCGGGU--CCGggaAGGGCUUUuGCG- -5'
29939 5' -56.8 NC_006273.1 + 203912 0.68 0.881143
Target:  5'- --aGCCCAGGCCga-CgaGGAGGCGCa -3'
miRNA:   3'- cugCGGGUCCGGgaaGggCUUUUGCG- -5'
29939 5' -56.8 NC_006273.1 + 201955 0.67 0.906648
Target:  5'- uGCGCCgGGGCugucgcgcgccgCCgacgCCCGAGGcgguGCGCg -3'
miRNA:   3'- cUGCGGgUCCG------------GGaa--GGGCUUU----UGCG- -5'
29939 5' -56.8 NC_006273.1 + 199400 0.69 0.836812
Target:  5'- uGAUGCCUGGaCCCacaagcgCCCGAAGccGCGCg -3'
miRNA:   3'- -CUGCGGGUCcGGGaa-----GGGCUUU--UGCG- -5'
29939 5' -56.8 NC_006273.1 + 197274 0.66 0.938334
Target:  5'- cGCGCCgGGGagaagaauCUCUUCCCGGGcccuGCGUu -3'
miRNA:   3'- cUGCGGgUCC--------GGGAAGGGCUUu---UGCG- -5'
29939 5' -56.8 NC_006273.1 + 194490 0.69 0.812226
Target:  5'- cGGCGCCgGcGCCCagcacgCCCGAAaacAACGCc -3'
miRNA:   3'- -CUGCGGgUcCGGGaa----GGGCUU---UUGCG- -5'
29939 5' -56.8 NC_006273.1 + 194458 0.66 0.947122
Target:  5'- cGACGCCgCAcGcGUCCg-CCCGA--GCGCa -3'
miRNA:   3'- -CUGCGG-GU-C-CGGGaaGGGCUuuUGCG- -5'
29939 5' -56.8 NC_006273.1 + 193349 0.67 0.918099
Target:  5'- cACGUaaaCCGGGCgCC-UCCCGGAGGCu- -3'
miRNA:   3'- cUGCG---GGUCCG-GGaAGGGCUUUUGcg -5'
29939 5' -56.8 NC_006273.1 + 188574 0.69 0.844669
Target:  5'- cGGCGCCCAGGUgCacgcugaugUCCuCGGGcuuAACGCc -3'
miRNA:   3'- -CUGCGGGUCCGgGa--------AGG-GCUU---UUGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.