miRNA display CGI


Results 1 - 20 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29939 5' -56.8 NC_006273.1 + 59646 0.7 0.803717
Target:  5'- -cCGCCCGGGCUCUcgUCCUGuccgUGCa -3'
miRNA:   3'- cuGCGGGUCCGGGA--AGGGCuuuuGCG- -5'
29939 5' -56.8 NC_006273.1 + 30098 0.71 0.740538
Target:  5'- aGACaGCCCAGGCCgaaCUCGGccguGAGCGCc -3'
miRNA:   3'- -CUG-CGGGUCCGGgaaGGGCU----UUUGCG- -5'
29939 5' -56.8 NC_006273.1 + 112607 0.71 0.749894
Target:  5'- uGCGCCgAGcaGCCgUUgCCCGGGAACGUa -3'
miRNA:   3'- cUGCGGgUC--CGGgAA-GGGCUUUUGCG- -5'
29939 5' -56.8 NC_006273.1 + 163671 0.71 0.749894
Target:  5'- cGACGUcggggUCGGGCCCggaacaauaCCCGAGGAgGCg -3'
miRNA:   3'- -CUGCG-----GGUCCGGGaa-------GGGCUUUUgCG- -5'
29939 5' -56.8 NC_006273.1 + 37127 0.7 0.768308
Target:  5'- aACGCCgCAGGCCCUcauagUCgCGucgcACGCa -3'
miRNA:   3'- cUGCGG-GUCCGGGA-----AGgGCuuu-UGCG- -5'
29939 5' -56.8 NC_006273.1 + 151796 0.7 0.768308
Target:  5'- cGCGCCCAGGCUCauggagUCCuCGcgccgcGAGGCGUa -3'
miRNA:   3'- cUGCGGGUCCGGGa-----AGG-GC------UUUUGCG- -5'
29939 5' -56.8 NC_006273.1 + 67945 0.7 0.786271
Target:  5'- aGACGCagCAGGCCCUgcaacacgccgUCCaucAAGCGCa -3'
miRNA:   3'- -CUGCGg-GUCCGGGA-----------AGGgcuUUUGCG- -5'
29939 5' -56.8 NC_006273.1 + 163859 0.7 0.786271
Target:  5'- -cCGCCggcgaGGGCCCUcguUCCuCGAGGACGg -3'
miRNA:   3'- cuGCGGg----UCCGGGA---AGG-GCUUUUGCg -5'
29939 5' -56.8 NC_006273.1 + 233888 0.7 0.795062
Target:  5'- cGGCGCCCAGcGCCagguacagUCCGuccuGCGCg -3'
miRNA:   3'- -CUGCGGGUC-CGGgaa-----GGGCuuu-UGCG- -5'
29939 5' -56.8 NC_006273.1 + 152475 0.72 0.682841
Target:  5'- uGCGCCUccagccgcuccgAGcGCaCCUUCuuGAAGACGCg -3'
miRNA:   3'- cUGCGGG------------UC-CG-GGAAGggCUUUUGCG- -5'
29939 5' -56.8 NC_006273.1 + 124206 0.72 0.653357
Target:  5'- cGugGCCgaCGGGCCCgaUUCCGAAgguuggggucGACGCg -3'
miRNA:   3'- -CugCGG--GUCCGGGa-AGGGCUU----------UUGCG- -5'
29939 5' -56.8 NC_006273.1 + 30735 0.73 0.613855
Target:  5'- cGAcCGCCUAGuguGCCCUcgcugCCCGAGAACGg -3'
miRNA:   3'- -CU-GCGGGUC---CGGGAa----GGGCUUUUGCg -5'
29939 5' -56.8 NC_006273.1 + 234347 0.8 0.271217
Target:  5'- gGACGCCguGGCCCggcgUCgCCGuAGGCGCa -3'
miRNA:   3'- -CUGCGGguCCGGGa---AG-GGCuUUUGCG- -5'
29939 5' -56.8 NC_006273.1 + 212068 0.79 0.310439
Target:  5'- gGGCGCCCAGGCCg-UCCCG--GugGCc -3'
miRNA:   3'- -CUGCGGGUCCGGgaAGGGCuuUugCG- -5'
29939 5' -56.8 NC_006273.1 + 40615 0.78 0.377078
Target:  5'- cGGCuGCCCcGGCCUUUCaCCGGAGACGg -3'
miRNA:   3'- -CUG-CGGGuCCGGGAAG-GGCUUUUGCg -5'
29939 5' -56.8 NC_006273.1 + 47075 0.77 0.409635
Target:  5'- aACGCCCGGGCUCacgcaCCCugGAGGACGCg -3'
miRNA:   3'- cUGCGGGUCCGGGaa---GGG--CUUUUGCG- -5'
29939 5' -56.8 NC_006273.1 + 104111 0.76 0.452699
Target:  5'- --aGCaCCuGGCCCUcggugugCCCGAAGACGCu -3'
miRNA:   3'- cugCG-GGuCCGGGAa------GGGCUUUUGCG- -5'
29939 5' -56.8 NC_006273.1 + 187550 0.74 0.543533
Target:  5'- cGGCGCCgAGGCCCagcgacgacaggUCCgCGAAccGGCGCu -3'
miRNA:   3'- -CUGCGGgUCCGGGa-----------AGG-GCUU--UUGCG- -5'
29939 5' -56.8 NC_006273.1 + 164469 0.74 0.574555
Target:  5'- aGGCGUCCAGGCaa--CCCGAGgccgGACGCu -3'
miRNA:   3'- -CUGCGGGUCCGggaaGGGCUU----UUGCG- -5'
29939 5' -56.8 NC_006273.1 + 82524 0.74 0.574555
Target:  5'- uACGCCaacGGCCUUUCCCGc-GGCGCc -3'
miRNA:   3'- cUGCGGgu-CCGGGAAGGGCuuUUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.