miRNA display CGI


Results 1 - 20 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29939 5' -56.8 NC_006273.1 + 46486 1.1 0.003375
Target:  5'- uGACGCCCAGGCCCUUCCCGAAAACGCc -3'
miRNA:   3'- -CUGCGGGUCCGGGAAGGGCUUUUGCG- -5'
29939 5' -56.8 NC_006273.1 + 156329 0.69 0.817259
Target:  5'- uGACGCCgCAGGCUCUgguggcgcgugggCCCagccuGGCGCa -3'
miRNA:   3'- -CUGCGG-GUCCGGGAa------------GGGcuu--UUGCG- -5'
29939 5' -56.8 NC_006273.1 + 199400 0.69 0.836812
Target:  5'- uGAUGCCUGGaCCCacaagcgCCCGAAGccGCGCg -3'
miRNA:   3'- -CUGCGGGUCcGGGaa-----GGGCUUU--UGCG- -5'
29939 5' -56.8 NC_006273.1 + 35322 0.66 0.951188
Target:  5'- aACaCCCAGGCCgCgggauauggaCUCGGAGGCGCc -3'
miRNA:   3'- cUGcGGGUCCGG-Gaa--------GGGCUUUUGCG- -5'
29939 5' -56.8 NC_006273.1 + 107626 0.73 0.623729
Target:  5'- gGACugGCaCCGGGcCCCUUCCaCGAAcuGCGCa -3'
miRNA:   3'- -CUG--CG-GGUCC-GGGAAGG-GCUUu-UGCG- -5'
29939 5' -56.8 NC_006273.1 + 147903 0.73 0.633608
Target:  5'- cGGCGCCCGGGCCg--CCUGAGGAa-- -3'
miRNA:   3'- -CUGCGGGUCCGGgaaGGGCUUUUgcg -5'
29939 5' -56.8 NC_006273.1 + 93029 0.71 0.722526
Target:  5'- --gGCCCGGGCCCgaugccacggcgcugUCCUGAcuuuccGCGCg -3'
miRNA:   3'- cugCGGGUCCGGGa--------------AGGGCUuu----UGCG- -5'
29939 5' -56.8 NC_006273.1 + 185486 0.7 0.768308
Target:  5'- aGCGCCCugGGGCCCUUCgUGGgcaAGAUGg -3'
miRNA:   3'- cUGCGGG--UCCGGGAAGgGCU---UUUGCg -5'
29939 5' -56.8 NC_006273.1 + 109950 0.7 0.795062
Target:  5'- uGGCGCCgGGGCUUUUgcuacgUCCG-AAACGCa -3'
miRNA:   3'- -CUGCGGgUCCGGGAA------GGGCuUUUGCG- -5'
29939 5' -56.8 NC_006273.1 + 234428 0.69 0.812226
Target:  5'- cGGCGCCgGcGCCCagcacgCCCGAAaacAACGCc -3'
miRNA:   3'- -CUGCGGgUcCGGGaa----GGGCUU---UUGCG- -5'
29939 5' -56.8 NC_006273.1 + 141004 0.7 0.803717
Target:  5'- cGCGCCCGGuGCCCggcccacggCCCcGGAugGUg -3'
miRNA:   3'- cUGCGGGUC-CGGGaa-------GGGcUUUugCG- -5'
29939 5' -56.8 NC_006273.1 + 38995 0.7 0.795062
Target:  5'- cGGCGCCCAGcGCCagguacagUCCGuccuGCGCg -3'
miRNA:   3'- -CUGCGGGUC-CGGgaa-----GGGCuuu-UGCG- -5'
29939 5' -56.8 NC_006273.1 + 39454 0.8 0.271217
Target:  5'- gGACGCCguGGCCCggcgUCgCCGuAGGCGCa -3'
miRNA:   3'- -CUGCGGguCCGGGa---AG-GGCuUUUGCG- -5'
29939 5' -56.8 NC_006273.1 + 39304 0.69 0.812226
Target:  5'- cGGCGCCCAuGGCCUgguauuccagCuCCGucAGCGCc -3'
miRNA:   3'- -CUGCGGGU-CCGGGaa--------G-GGCuuUUGCG- -5'
29939 5' -56.8 NC_006273.1 + 37147 0.75 0.507446
Target:  5'- uGGCgGCCguGGCCUguggCCCGAAGAUGUa -3'
miRNA:   3'- -CUG-CGGguCCGGGaa--GGGCUUUUGCG- -5'
29939 5' -56.8 NC_006273.1 + 45768 0.7 0.786271
Target:  5'- aAUGUCCGuacaccGGCCCUUCCCGAc-ACGg -3'
miRNA:   3'- cUGCGGGU------CCGGGAAGGGCUuuUGCg -5'
29939 5' -56.8 NC_006273.1 + 131136 0.69 0.812226
Target:  5'- cACGCCCGuGCUCUcgCCCGAAcACGg -3'
miRNA:   3'- cUGCGGGUcCGGGAa-GGGCUUuUGCg -5'
29939 5' -56.8 NC_006273.1 + 36598 0.69 0.828781
Target:  5'- uGGCGUCCGGGCUCggugaccUCUCGGucGGCGUg -3'
miRNA:   3'- -CUGCGGGUCCGGGa------AGGGCUu-UUGCG- -5'
29939 5' -56.8 NC_006273.1 + 153243 0.73 0.594153
Target:  5'- aGAUGCuUCuGGCCCUggCCCGucuGGACGCa -3'
miRNA:   3'- -CUGCG-GGuCCGGGAa-GGGCu--UUUGCG- -5'
29939 5' -56.8 NC_006273.1 + 169676 0.73 0.643487
Target:  5'- cGGCGCCguGGCCgUUgCCGcguuAGCGCc -3'
miRNA:   3'- -CUGCGGguCCGGgAAgGGCuu--UUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.