miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29940 3' -56.6 NC_006273.1 + 45455 1.08 0.004782
Target:  5'- aACAAACCUCCGUGCGAGCCGACGGUGa -3'
miRNA:   3'- -UGUUUGGAGGCACGCUCGGCUGCCAC- -5'
29940 3' -56.6 NC_006273.1 + 94125 0.76 0.461606
Target:  5'- cGCGAGCC-CCGUGcCGGGCaugggucgCGGCGGUGg -3'
miRNA:   3'- -UGUUUGGaGGCAC-GCUCG--------GCUGCCAC- -5'
29940 3' -56.6 NC_006273.1 + 190358 0.75 0.498115
Target:  5'- aGCAGGCCgccgCCGUGgGGGCCG-CGGa- -3'
miRNA:   3'- -UGUUUGGa---GGCACgCUCGGCuGCCac -5'
29940 3' -56.6 NC_006273.1 + 46225 0.75 0.507446
Target:  5'- cCAGACCUCUGUGCGAGUCGcCGcGa- -3'
miRNA:   3'- uGUUUGGAGGCACGCUCGGCuGC-Cac -5'
29940 3' -56.6 NC_006273.1 + 31224 0.74 0.594153
Target:  5'- uACGGACCaCCGUGCGGGgCGAcaCGGUa -3'
miRNA:   3'- -UGUUUGGaGGCACGCUCgGCU--GCCAc -5'
29940 3' -56.6 NC_006273.1 + 196643 0.71 0.749894
Target:  5'- gUAGGCCgUCagGUGCGAgGCCGaACGGUGa -3'
miRNA:   3'- uGUUUGG-AGg-CACGCU-CGGC-UGCCAC- -5'
29940 3' -56.6 NC_006273.1 + 161110 0.71 0.759154
Target:  5'- gACGAcuaCUCCGUGUG-GCuCGACGGUa -3'
miRNA:   3'- -UGUUug-GAGGCACGCuCG-GCUGCCAc -5'
29940 3' -56.6 NC_006273.1 + 116935 0.71 0.768308
Target:  5'- cCAGACCUCaCG-GCG-GCCGACcGUGa -3'
miRNA:   3'- uGUUUGGAG-GCaCGCuCGGCUGcCAC- -5'
29940 3' -56.6 NC_006273.1 + 61747 0.69 0.820583
Target:  5'- cGCGAGCg-CCGUGCGcGCCuucGugGGUGc -3'
miRNA:   3'- -UGUUUGgaGGCACGCuCGG---CugCCAC- -5'
29940 3' -56.6 NC_006273.1 + 214756 0.69 0.844669
Target:  5'- -gGAGCa-CCGUGgGuGCCGGCGGUa -3'
miRNA:   3'- ugUUUGgaGGCACgCuCGGCUGCCAc -5'
29940 3' -56.6 NC_006273.1 + 158686 0.69 0.850063
Target:  5'- cACGGACCagCCGUgaggcagggcacacGCGGGUCGGCGGc- -3'
miRNA:   3'- -UGUUUGGa-GGCA--------------CGCUCGGCUGCCac -5'
29940 3' -56.6 NC_006273.1 + 202728 0.69 0.859838
Target:  5'- uCGGGCCUgCGacGCGAcGCCGACGGc- -3'
miRNA:   3'- uGUUUGGAgGCa-CGCU-CGGCUGCCac -5'
29940 3' -56.6 NC_006273.1 + 1773 0.68 0.867139
Target:  5'- uACAGACg-CCGggaagGCGAcugcaGCCGAUGGUGc -3'
miRNA:   3'- -UGUUUGgaGGCa----CGCU-----CGGCUGCCAC- -5'
29940 3' -56.6 NC_006273.1 + 77147 0.68 0.867139
Target:  5'- gGCGAACCgCCGUcGCcGGCCGACGc-- -3'
miRNA:   3'- -UGUUUGGaGGCA-CGcUCGGCUGCcac -5'
29940 3' -56.6 NC_006273.1 + 196665 0.68 0.867139
Target:  5'- uACAGACg-CCGggaagGCGAcugcaGCCGAUGGUGc -3'
miRNA:   3'- -UGUUUGgaGGCa----CGCU-----CGGCUGCCAC- -5'
29940 3' -56.6 NC_006273.1 + 211710 0.68 0.874242
Target:  5'- gGCGGGCCUCUG-G-GGGCCGcACGGa- -3'
miRNA:   3'- -UGUUUGGAGGCaCgCUCGGC-UGCCac -5'
29940 3' -56.6 NC_006273.1 + 187146 0.68 0.881143
Target:  5'- gGCucGCCUCCGUGCGGacGCCGuuucGUGc -3'
miRNA:   3'- -UGuuUGGAGGCACGCU--CGGCugc-CAC- -5'
29940 3' -56.6 NC_006273.1 + 6149 0.68 0.881143
Target:  5'- ---cACC-CCGUGUGuacacGCCGugGGUGc -3'
miRNA:   3'- uguuUGGaGGCACGCu----CGGCugCCAC- -5'
29940 3' -56.6 NC_006273.1 + 44477 0.68 0.881143
Target:  5'- aACAAGCCgcgcgacaaCGgGCGAG-CGGCGGUGa -3'
miRNA:   3'- -UGUUUGGag-------GCaCGCUCgGCUGCCAC- -5'
29940 3' -56.6 NC_006273.1 + 91278 0.68 0.887838
Target:  5'- cGCAGACCcUCGUcGCGAGCCagcGCGGc- -3'
miRNA:   3'- -UGUUUGGaGGCA-CGCUCGGc--UGCCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.