miRNA display CGI


Results 21 - 40 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29940 3' -56.6 NC_006273.1 + 5943 0.68 0.894322
Target:  5'- cGCAAucgcACCacaggCCGUGCGAGUCGugGa-- -3'
miRNA:   3'- -UGUU----UGGa----GGCACGCUCGGCugCcac -5'
29940 3' -56.6 NC_006273.1 + 162181 0.68 0.894322
Target:  5'- gGCGAAuCCUCCG-GCGGa--GGCGGUGg -3'
miRNA:   3'- -UGUUU-GGAGGCaCGCUcggCUGCCAC- -5'
29940 3' -56.6 NC_006273.1 + 1735 0.68 0.900594
Target:  5'- -gGAGCUgcgCCGgcgGUGGGCCggcacGACGGUGg -3'
miRNA:   3'- ugUUUGGa--GGCa--CGCUCGG-----CUGCCAC- -5'
29940 3' -56.6 NC_006273.1 + 196627 0.68 0.900594
Target:  5'- -gGAGCUgcgCCGgcgGUGGGCCggcacGACGGUGg -3'
miRNA:   3'- ugUUUGGa--GGCa--CGCUCGG-----CUGCCAC- -5'
29940 3' -56.6 NC_006273.1 + 147957 0.67 0.906648
Target:  5'- cCGAGCCcCCGUcGCccgaggcggagGAGCCGGCGGc- -3'
miRNA:   3'- uGUUUGGaGGCA-CG-----------CUCGGCUGCCac -5'
29940 3' -56.6 NC_006273.1 + 5860 0.67 0.918099
Target:  5'- gGCGGcCCUCCGUucggcuCGGGUCGugGGUc -3'
miRNA:   3'- -UGUUuGGAGGCAc-----GCUCGGCugCCAc -5'
29940 3' -56.6 NC_006273.1 + 135153 0.67 0.918099
Target:  5'- ---cGCgUCCGUGUucGAGCaccuGACGGUGg -3'
miRNA:   3'- uguuUGgAGGCACG--CUCGg---CUGCCAC- -5'
29940 3' -56.6 NC_006273.1 + 78322 0.67 0.922962
Target:  5'- uCGGAUCUUCGgcuaccucguaguUGCacacGGCCGACGGUGg -3'
miRNA:   3'- uGUUUGGAGGC-------------ACGc---UCGGCUGCCAC- -5'
29940 3' -56.6 NC_006273.1 + 123491 0.67 0.922962
Target:  5'- cGCAGGCCcUCG-GCGuacugcaGGCUGugGGUGg -3'
miRNA:   3'- -UGUUUGGaGGCaCGC-------UCGGCugCCAC- -5'
29940 3' -56.6 NC_006273.1 + 229802 0.67 0.923491
Target:  5'- aGCAcGCUUCCGa--GGGCUGGCGGUu -3'
miRNA:   3'- -UGUuUGGAGGCacgCUCGGCUGCCAc -5'
29940 3' -56.6 NC_006273.1 + 194464 0.67 0.923491
Target:  5'- cGCAcGCgUCCGccCGAGCgcaGACGGUGa -3'
miRNA:   3'- -UGUuUGgAGGCacGCUCGg--CUGCCAC- -5'
29940 3' -56.6 NC_006273.1 + 193112 0.67 0.923491
Target:  5'- cGCGggUCUCCG-GCGGuaacgaCGGCGGUGu -3'
miRNA:   3'- -UGUuuGGAGGCaCGCUcg----GCUGCCAC- -5'
29940 3' -56.6 NC_006273.1 + 130036 0.67 0.928155
Target:  5'- cCGAGCCUCUuuUGCGAcuguccuGgCGGCGGUGg -3'
miRNA:   3'- uGUUUGGAGGc-ACGCU-------CgGCUGCCAC- -5'
29940 3' -56.6 NC_006273.1 + 54523 0.67 0.928662
Target:  5'- uGCAGACgUUCaUGuCGAcguaGCCGGCGGUGc -3'
miRNA:   3'- -UGUUUGgAGGcAC-GCU----CGGCUGCCAC- -5'
29940 3' -56.6 NC_006273.1 + 170863 0.67 0.928662
Target:  5'- gGCAggGACa-CCGaUGuCGAGCCGGCGGg- -3'
miRNA:   3'- -UGU--UUGgaGGC-AC-GCUCGGCUGCCac -5'
29940 3' -56.6 NC_006273.1 + 103550 0.66 0.938334
Target:  5'- gGCcAGCCccaggCCGUGCGGGCUGGucgcCGaGUGg -3'
miRNA:   3'- -UGuUUGGa----GGCACGCUCGGCU----GC-CAC- -5'
29940 3' -56.6 NC_006273.1 + 167417 0.66 0.942397
Target:  5'- gACAGACUUCCacagugGCGGGCgcgcucuCGGCGGUc -3'
miRNA:   3'- -UGUUUGGAGGca----CGCUCG-------GCUGCCAc -5'
29940 3' -56.6 NC_006273.1 + 1431 0.66 0.942838
Target:  5'- -uGGACC-CCGcgGcCGAcCCGACGGUGg -3'
miRNA:   3'- ugUUUGGaGGCa-C-GCUcGGCUGCCAC- -5'
29940 3' -56.6 NC_006273.1 + 117816 0.66 0.942838
Target:  5'- gAUGAACCaccgUCCGgaUGgGAGCguuaCGACGGUGg -3'
miRNA:   3'- -UGUUUGG----AGGC--ACgCUCG----GCUGCCAC- -5'
29940 3' -56.6 NC_006273.1 + 196324 0.66 0.942838
Target:  5'- -uGGACC-CCGcgGcCGAcCCGACGGUGg -3'
miRNA:   3'- ugUUUGGaGGCa-C-GCUcGGCUGCCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.