miRNA display CGI


Results 21 - 40 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29940 3' -56.6 NC_006273.1 + 229802 0.67 0.923491
Target:  5'- aGCAcGCUUCCGa--GGGCUGGCGGUu -3'
miRNA:   3'- -UGUuUGGAGGCacgCUCGGCUGCCAc -5'
29940 3' -56.6 NC_006273.1 + 78322 0.67 0.922962
Target:  5'- uCGGAUCUUCGgcuaccucguaguUGCacacGGCCGACGGUGg -3'
miRNA:   3'- uGUUUGGAGGC-------------ACGc---UCGGCUGCCAC- -5'
29940 3' -56.6 NC_006273.1 + 123491 0.67 0.922962
Target:  5'- cGCAGGCCcUCG-GCGuacugcaGGCUGugGGUGg -3'
miRNA:   3'- -UGUUUGGaGGCaCGC-------UCGGCugCCAC- -5'
29940 3' -56.6 NC_006273.1 + 5860 0.67 0.918099
Target:  5'- gGCGGcCCUCCGUucggcuCGGGUCGugGGUc -3'
miRNA:   3'- -UGUUuGGAGGCAc-----GCUCGGCugCCAc -5'
29940 3' -56.6 NC_006273.1 + 135153 0.67 0.918099
Target:  5'- ---cGCgUCCGUGUucGAGCaccuGACGGUGg -3'
miRNA:   3'- uguuUGgAGGCACG--CUCGg---CUGCCAC- -5'
29940 3' -56.6 NC_006273.1 + 147957 0.67 0.906648
Target:  5'- cCGAGCCcCCGUcGCccgaggcggagGAGCCGGCGGc- -3'
miRNA:   3'- uGUUUGGaGGCA-CG-----------CUCGGCUGCCac -5'
29940 3' -56.6 NC_006273.1 + 196627 0.68 0.900594
Target:  5'- -gGAGCUgcgCCGgcgGUGGGCCggcacGACGGUGg -3'
miRNA:   3'- ugUUUGGa--GGCa--CGCUCGG-----CUGCCAC- -5'
29940 3' -56.6 NC_006273.1 + 1735 0.68 0.900594
Target:  5'- -gGAGCUgcgCCGgcgGUGGGCCggcacGACGGUGg -3'
miRNA:   3'- ugUUUGGa--GGCa--CGCUCGG-----CUGCCAC- -5'
29940 3' -56.6 NC_006273.1 + 5943 0.68 0.894322
Target:  5'- cGCAAucgcACCacaggCCGUGCGAGUCGugGa-- -3'
miRNA:   3'- -UGUU----UGGa----GGCACGCUCGGCugCcac -5'
29940 3' -56.6 NC_006273.1 + 162181 0.68 0.894322
Target:  5'- gGCGAAuCCUCCG-GCGGa--GGCGGUGg -3'
miRNA:   3'- -UGUUU-GGAGGCaCGCUcggCUGCCAC- -5'
29940 3' -56.6 NC_006273.1 + 91278 0.68 0.887838
Target:  5'- cGCAGACCcUCGUcGCGAGCCagcGCGGc- -3'
miRNA:   3'- -UGUUUGGaGGCA-CGCUCGGc--UGCCac -5'
29940 3' -56.6 NC_006273.1 + 6149 0.68 0.881143
Target:  5'- ---cACC-CCGUGUGuacacGCCGugGGUGc -3'
miRNA:   3'- uguuUGGaGGCACGCu----CGGCugCCAC- -5'
29940 3' -56.6 NC_006273.1 + 44477 0.68 0.881143
Target:  5'- aACAAGCCgcgcgacaaCGgGCGAG-CGGCGGUGa -3'
miRNA:   3'- -UGUUUGGag-------GCaCGCUCgGCUGCCAC- -5'
29940 3' -56.6 NC_006273.1 + 187146 0.68 0.881143
Target:  5'- gGCucGCCUCCGUGCGGacGCCGuuucGUGc -3'
miRNA:   3'- -UGuuUGGAGGCACGCU--CGGCugc-CAC- -5'
29940 3' -56.6 NC_006273.1 + 211710 0.68 0.874242
Target:  5'- gGCGGGCCUCUG-G-GGGCCGcACGGa- -3'
miRNA:   3'- -UGUUUGGAGGCaCgCUCGGC-UGCCac -5'
29940 3' -56.6 NC_006273.1 + 1773 0.68 0.867139
Target:  5'- uACAGACg-CCGggaagGCGAcugcaGCCGAUGGUGc -3'
miRNA:   3'- -UGUUUGgaGGCa----CGCU-----CGGCUGCCAC- -5'
29940 3' -56.6 NC_006273.1 + 196665 0.68 0.867139
Target:  5'- uACAGACg-CCGggaagGCGAcugcaGCCGAUGGUGc -3'
miRNA:   3'- -UGUUUGgaGGCa----CGCU-----CGGCUGCCAC- -5'
29940 3' -56.6 NC_006273.1 + 77147 0.68 0.867139
Target:  5'- gGCGAACCgCCGUcGCcGGCCGACGc-- -3'
miRNA:   3'- -UGUUUGGaGGCA-CGcUCGGCUGCcac -5'
29940 3' -56.6 NC_006273.1 + 202728 0.69 0.859838
Target:  5'- uCGGGCCUgCGacGCGAcGCCGACGGc- -3'
miRNA:   3'- uGUUUGGAgGCa-CGCU-CGGCUGCCac -5'
29940 3' -56.6 NC_006273.1 + 158686 0.69 0.850063
Target:  5'- cACGGACCagCCGUgaggcagggcacacGCGGGUCGGCGGc- -3'
miRNA:   3'- -UGUUUGGa-GGCA--------------CGCUCGGCUGCCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.