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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
29940 | 3' | -56.6 | NC_006273.1 | + | 214756 | 0.69 | 0.844669 |
Target: 5'- -gGAGCa-CCGUGgGuGCCGGCGGUa -3' miRNA: 3'- ugUUUGgaGGCACgCuCGGCUGCCAc -5' |
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29940 | 3' | -56.6 | NC_006273.1 | + | 61747 | 0.69 | 0.820583 |
Target: 5'- cGCGAGCg-CCGUGCGcGCCuucGugGGUGc -3' miRNA: 3'- -UGUUUGgaGGCACGCuCGG---CugCCAC- -5' |
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29940 | 3' | -56.6 | NC_006273.1 | + | 116935 | 0.71 | 0.768308 |
Target: 5'- cCAGACCUCaCG-GCG-GCCGACcGUGa -3' miRNA: 3'- uGUUUGGAG-GCaCGCuCGGCUGcCAC- -5' |
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29940 | 3' | -56.6 | NC_006273.1 | + | 161110 | 0.71 | 0.759154 |
Target: 5'- gACGAcuaCUCCGUGUG-GCuCGACGGUa -3' miRNA: 3'- -UGUUug-GAGGCACGCuCG-GCUGCCAc -5' |
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29940 | 3' | -56.6 | NC_006273.1 | + | 196643 | 0.71 | 0.749894 |
Target: 5'- gUAGGCCgUCagGUGCGAgGCCGaACGGUGa -3' miRNA: 3'- uGUUUGG-AGg-CACGCU-CGGC-UGCCAC- -5' |
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29940 | 3' | -56.6 | NC_006273.1 | + | 31224 | 0.74 | 0.594153 |
Target: 5'- uACGGACCaCCGUGCGGGgCGAcaCGGUa -3' miRNA: 3'- -UGUUUGGaGGCACGCUCgGCU--GCCAc -5' |
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29940 | 3' | -56.6 | NC_006273.1 | + | 46225 | 0.75 | 0.507446 |
Target: 5'- cCAGACCUCUGUGCGAGUCGcCGcGa- -3' miRNA: 3'- uGUUUGGAGGCACGCUCGGCuGC-Cac -5' |
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29940 | 3' | -56.6 | NC_006273.1 | + | 190358 | 0.75 | 0.498115 |
Target: 5'- aGCAGGCCgccgCCGUGgGGGCCG-CGGa- -3' miRNA: 3'- -UGUUUGGa---GGCACgCUCGGCuGCCac -5' |
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29940 | 3' | -56.6 | NC_006273.1 | + | 94125 | 0.76 | 0.461606 |
Target: 5'- cGCGAGCC-CCGUGcCGGGCaugggucgCGGCGGUGg -3' miRNA: 3'- -UGUUUGGaGGCAC-GCUCG--------GCUGCCAC- -5' |
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29940 | 3' | -56.6 | NC_006273.1 | + | 45455 | 1.08 | 0.004782 |
Target: 5'- aACAAACCUCCGUGCGAGCCGACGGUGa -3' miRNA: 3'- -UGUUUGGAGGCACGCUCGGCUGCCAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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