miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29940 3' -56.6 NC_006273.1 + 1431 0.66 0.942838
Target:  5'- -uGGACC-CCGcgGcCGAcCCGACGGUGg -3'
miRNA:   3'- ugUUUGGaGGCa-C-GCUcGGCUGCCAC- -5'
29940 3' -56.6 NC_006273.1 + 1735 0.68 0.900594
Target:  5'- -gGAGCUgcgCCGgcgGUGGGCCggcacGACGGUGg -3'
miRNA:   3'- ugUUUGGa--GGCa--CGCUCGG-----CUGCCAC- -5'
29940 3' -56.6 NC_006273.1 + 1773 0.68 0.867139
Target:  5'- uACAGACg-CCGggaagGCGAcugcaGCCGAUGGUGc -3'
miRNA:   3'- -UGUUUGgaGGCa----CGCU-----CGGCUGCCAC- -5'
29940 3' -56.6 NC_006273.1 + 5860 0.67 0.918099
Target:  5'- gGCGGcCCUCCGUucggcuCGGGUCGugGGUc -3'
miRNA:   3'- -UGUUuGGAGGCAc-----GCUCGGCugCCAc -5'
29940 3' -56.6 NC_006273.1 + 5943 0.68 0.894322
Target:  5'- cGCAAucgcACCacaggCCGUGCGAGUCGugGa-- -3'
miRNA:   3'- -UGUU----UGGa----GGCACGCUCGGCugCcac -5'
29940 3' -56.6 NC_006273.1 + 6149 0.68 0.881143
Target:  5'- ---cACC-CCGUGUGuacacGCCGugGGUGc -3'
miRNA:   3'- uguuUGGaGGCACGCu----CGGCugCCAC- -5'
29940 3' -56.6 NC_006273.1 + 31224 0.74 0.594153
Target:  5'- uACGGACCaCCGUGCGGGgCGAcaCGGUa -3'
miRNA:   3'- -UGUUUGGaGGCACGCUCgGCU--GCCAc -5'
29940 3' -56.6 NC_006273.1 + 44477 0.68 0.881143
Target:  5'- aACAAGCCgcgcgacaaCGgGCGAG-CGGCGGUGa -3'
miRNA:   3'- -UGUUUGGag-------GCaCGCUCgGCUGCCAC- -5'
29940 3' -56.6 NC_006273.1 + 44732 0.66 0.942838
Target:  5'- cCGAACCgCCG-GcCGAGCUggaGAUGGUGg -3'
miRNA:   3'- uGUUUGGaGGCaC-GCUCGG---CUGCCAC- -5'
29940 3' -56.6 NC_006273.1 + 45455 1.08 0.004782
Target:  5'- aACAAACCUCCGUGCGAGCCGACGGUGa -3'
miRNA:   3'- -UGUUUGGAGGCACGCUCGGCUGCCAC- -5'
29940 3' -56.6 NC_006273.1 + 46225 0.75 0.507446
Target:  5'- cCAGACCUCUGUGCGAGUCGcCGcGa- -3'
miRNA:   3'- uGUUUGGAGGCACGCUCGGCuGC-Cac -5'
29940 3' -56.6 NC_006273.1 + 54523 0.67 0.928662
Target:  5'- uGCAGACgUUCaUGuCGAcguaGCCGGCGGUGc -3'
miRNA:   3'- -UGUUUGgAGGcAC-GCU----CGGCUGCCAC- -5'
29940 3' -56.6 NC_006273.1 + 61747 0.69 0.820583
Target:  5'- cGCGAGCg-CCGUGCGcGCCuucGugGGUGc -3'
miRNA:   3'- -UGUUUGgaGGCACGCuCGG---CugCCAC- -5'
29940 3' -56.6 NC_006273.1 + 72859 0.66 0.951188
Target:  5'- -aAGGCCaUCGUGCGgacGGCC-ACGGUGu -3'
miRNA:   3'- ugUUUGGaGGCACGC---UCGGcUGCCAC- -5'
29940 3' -56.6 NC_006273.1 + 77147 0.68 0.867139
Target:  5'- gGCGAACCgCCGUcGCcGGCCGACGc-- -3'
miRNA:   3'- -UGUUUGGaGGCA-CGcUCGGCUGCcac -5'
29940 3' -56.6 NC_006273.1 + 78322 0.67 0.922962
Target:  5'- uCGGAUCUUCGgcuaccucguaguUGCacacGGCCGACGGUGg -3'
miRNA:   3'- uGUUUGGAGGC-------------ACGc---UCGGCUGCCAC- -5'
29940 3' -56.6 NC_006273.1 + 91278 0.68 0.887838
Target:  5'- cGCAGACCcUCGUcGCGAGCCagcGCGGc- -3'
miRNA:   3'- -UGUUUGGaGGCA-CGCUCGGc--UGCCac -5'
29940 3' -56.6 NC_006273.1 + 94125 0.76 0.461606
Target:  5'- cGCGAGCC-CCGUGcCGGGCaugggucgCGGCGGUGg -3'
miRNA:   3'- -UGUUUGGaGGCAC-GCUCG--------GCUGCCAC- -5'
29940 3' -56.6 NC_006273.1 + 103550 0.66 0.938334
Target:  5'- gGCcAGCCccaggCCGUGCGGGCUGGucgcCGaGUGg -3'
miRNA:   3'- -UGuUUGGa----GGCACGCUCGGCU----GC-CAC- -5'
29940 3' -56.6 NC_006273.1 + 116935 0.71 0.768308
Target:  5'- cCAGACCUCaCG-GCG-GCCGACcGUGa -3'
miRNA:   3'- uGUUUGGAG-GCaCGCuCGGCUGcCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.