miRNA display CGI


Results 21 - 40 of 50 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29940 3' -56.6 NC_006273.1 + 117142 0.66 0.951188
Target:  5'- ---cACCUCCGgauagaaGuGCCGugGGUGu -3'
miRNA:   3'- uguuUGGAGGCacg----CuCGGCugCCAC- -5'
29940 3' -56.6 NC_006273.1 + 117816 0.66 0.942838
Target:  5'- gAUGAACCaccgUCCGgaUGgGAGCguuaCGACGGUGg -3'
miRNA:   3'- -UGUUUGG----AGGC--ACgCUCG----GCUGCCAC- -5'
29940 3' -56.6 NC_006273.1 + 123491 0.67 0.922962
Target:  5'- cGCAGGCCcUCG-GCGuacugcaGGCUGugGGUGg -3'
miRNA:   3'- -UGUUUGGaGGCaCGC-------UCGGCugCCAC- -5'
29940 3' -56.6 NC_006273.1 + 130036 0.67 0.928155
Target:  5'- cCGAGCCUCUuuUGCGAcuguccuGgCGGCGGUGg -3'
miRNA:   3'- uGUUUGGAGGc-ACGCU-------CgGCUGCCAC- -5'
29940 3' -56.6 NC_006273.1 + 135153 0.67 0.918099
Target:  5'- ---cGCgUCCGUGUucGAGCaccuGACGGUGg -3'
miRNA:   3'- uguuUGgAGGCACG--CUCGg---CUGCCAC- -5'
29940 3' -56.6 NC_006273.1 + 140184 0.66 0.95504
Target:  5'- cGCcGACC-CCGgcuggGCG-GCCGAUGGg- -3'
miRNA:   3'- -UGuUUGGaGGCa----CGCuCGGCUGCCac -5'
29940 3' -56.6 NC_006273.1 + 140328 0.66 0.951188
Target:  5'- gGCGGACCgagagCCG-GCGgcuaGGCCGAgGGa- -3'
miRNA:   3'- -UGUUUGGa----GGCaCGC----UCGGCUgCCac -5'
29940 3' -56.6 NC_006273.1 + 145552 0.66 0.947122
Target:  5'- gACGGGgUUCCGggcgGCGGuGCUGGCGGg- -3'
miRNA:   3'- -UGUUUgGAGGCa---CGCU-CGGCUGCCac -5'
29940 3' -56.6 NC_006273.1 + 147957 0.67 0.906648
Target:  5'- cCGAGCCcCCGUcGCccgaggcggagGAGCCGGCGGc- -3'
miRNA:   3'- uGUUUGGaGGCA-CG-----------CUCGGCUGCCac -5'
29940 3' -56.6 NC_006273.1 + 156693 0.66 0.951188
Target:  5'- cCGcGCCUCCGgcgGCGGuGCCcGCGGa- -3'
miRNA:   3'- uGUuUGGAGGCa--CGCU-CGGcUGCCac -5'
29940 3' -56.6 NC_006273.1 + 158686 0.69 0.850063
Target:  5'- cACGGACCagCCGUgaggcagggcacacGCGGGUCGGCGGc- -3'
miRNA:   3'- -UGUUUGGa-GGCA--------------CGCUCGGCUGCCac -5'
29940 3' -56.6 NC_006273.1 + 161110 0.71 0.759154
Target:  5'- gACGAcuaCUCCGUGUG-GCuCGACGGUa -3'
miRNA:   3'- -UGUUug-GAGGCACGCuCG-GCUGCCAc -5'
29940 3' -56.6 NC_006273.1 + 162181 0.68 0.894322
Target:  5'- gGCGAAuCCUCCG-GCGGa--GGCGGUGg -3'
miRNA:   3'- -UGUUU-GGAGGCaCGCUcggCUGCCAC- -5'
29940 3' -56.6 NC_006273.1 + 167417 0.66 0.942397
Target:  5'- gACAGACUUCCacagugGCGGGCgcgcucuCGGCGGUc -3'
miRNA:   3'- -UGUUUGGAGGca----CGCUCG-------GCUGCCAc -5'
29940 3' -56.6 NC_006273.1 + 170863 0.67 0.928662
Target:  5'- gGCAggGACa-CCGaUGuCGAGCCGGCGGg- -3'
miRNA:   3'- -UGU--UUGgaGGC-AC-GCUCGGCUGCCac -5'
29940 3' -56.6 NC_006273.1 + 179976 0.66 0.951188
Target:  5'- uGCAggUauuugUgGUGCGGGCCGugcCGGUGg -3'
miRNA:   3'- -UGUuuGga---GgCACGCUCGGCu--GCCAC- -5'
29940 3' -56.6 NC_006273.1 + 187146 0.68 0.881143
Target:  5'- gGCucGCCUCCGUGCGGacGCCGuuucGUGc -3'
miRNA:   3'- -UGuuUGGAGGCACGCU--CGGCugc-CAC- -5'
29940 3' -56.6 NC_006273.1 + 190358 0.75 0.498115
Target:  5'- aGCAGGCCgccgCCGUGgGGGCCG-CGGa- -3'
miRNA:   3'- -UGUUUGGa---GGCACgCUCGGCuGCCac -5'
29940 3' -56.6 NC_006273.1 + 193112 0.67 0.923491
Target:  5'- cGCGggUCUCCG-GCGGuaacgaCGGCGGUGu -3'
miRNA:   3'- -UGUuuGGAGGCaCGCUcg----GCUGCCAC- -5'
29940 3' -56.6 NC_006273.1 + 194464 0.67 0.923491
Target:  5'- cGCAcGCgUCCGccCGAGCgcaGACGGUGa -3'
miRNA:   3'- -UGUuUGgAGGCacGCUCGg--CUGCCAC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.