Results 1 - 20 of 50 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29940 | 3' | -56.6 | NC_006273.1 | + | 229802 | 0.67 | 0.923491 |
Target: 5'- aGCAcGCUUCCGa--GGGCUGGCGGUu -3' miRNA: 3'- -UGUuUGGAGGCacgCUCGGCUGCCAc -5' |
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29940 | 3' | -56.6 | NC_006273.1 | + | 214756 | 0.69 | 0.844669 |
Target: 5'- -gGAGCa-CCGUGgGuGCCGGCGGUa -3' miRNA: 3'- ugUUUGgaGGCACgCuCGGCUGCCAc -5' |
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29940 | 3' | -56.6 | NC_006273.1 | + | 211710 | 0.68 | 0.874242 |
Target: 5'- gGCGGGCCUCUG-G-GGGCCGcACGGa- -3' miRNA: 3'- -UGUUUGGAGGCaCgCUCGGC-UGCCac -5' |
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29940 | 3' | -56.6 | NC_006273.1 | + | 209642 | 0.66 | 0.946703 |
Target: 5'- uACAGACCUCCGauggcugUGCGAGuaacuCCGuuGGg- -3' miRNA: 3'- -UGUUUGGAGGC-------ACGCUC-----GGCugCCac -5' |
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29940 | 3' | -56.6 | NC_006273.1 | + | 206691 | 0.66 | 0.947122 |
Target: 5'- aGCAGgucGCCgUCCGUGU-AGCaauuuGACGGUGa -3' miRNA: 3'- -UGUU---UGG-AGGCACGcUCGg----CUGCCAC- -5' |
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29940 | 3' | -56.6 | NC_006273.1 | + | 202728 | 0.69 | 0.859838 |
Target: 5'- uCGGGCCUgCGacGCGAcGCCGACGGc- -3' miRNA: 3'- uGUUUGGAgGCa-CGCU-CGGCUGCCac -5' |
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29940 | 3' | -56.6 | NC_006273.1 | + | 196665 | 0.68 | 0.867139 |
Target: 5'- uACAGACg-CCGggaagGCGAcugcaGCCGAUGGUGc -3' miRNA: 3'- -UGUUUGgaGGCa----CGCU-----CGGCUGCCAC- -5' |
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29940 | 3' | -56.6 | NC_006273.1 | + | 196643 | 0.71 | 0.749894 |
Target: 5'- gUAGGCCgUCagGUGCGAgGCCGaACGGUGa -3' miRNA: 3'- uGUUUGG-AGg-CACGCU-CGGC-UGCCAC- -5' |
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29940 | 3' | -56.6 | NC_006273.1 | + | 196627 | 0.68 | 0.900594 |
Target: 5'- -gGAGCUgcgCCGgcgGUGGGCCggcacGACGGUGg -3' miRNA: 3'- ugUUUGGa--GGCa--CGCUCGG-----CUGCCAC- -5' |
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29940 | 3' | -56.6 | NC_006273.1 | + | 196324 | 0.66 | 0.942838 |
Target: 5'- -uGGACC-CCGcgGcCGAcCCGACGGUGg -3' miRNA: 3'- ugUUUGGaGGCa-C-GCUcGGCUGCCAC- -5' |
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29940 | 3' | -56.6 | NC_006273.1 | + | 194464 | 0.67 | 0.923491 |
Target: 5'- cGCAcGCgUCCGccCGAGCgcaGACGGUGa -3' miRNA: 3'- -UGUuUGgAGGCacGCUCGg--CUGCCAC- -5' |
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29940 | 3' | -56.6 | NC_006273.1 | + | 193112 | 0.67 | 0.923491 |
Target: 5'- cGCGggUCUCCG-GCGGuaacgaCGGCGGUGu -3' miRNA: 3'- -UGUuuGGAGGCaCGCUcg----GCUGCCAC- -5' |
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29940 | 3' | -56.6 | NC_006273.1 | + | 190358 | 0.75 | 0.498115 |
Target: 5'- aGCAGGCCgccgCCGUGgGGGCCG-CGGa- -3' miRNA: 3'- -UGUUUGGa---GGCACgCUCGGCuGCCac -5' |
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29940 | 3' | -56.6 | NC_006273.1 | + | 187146 | 0.68 | 0.881143 |
Target: 5'- gGCucGCCUCCGUGCGGacGCCGuuucGUGc -3' miRNA: 3'- -UGuuUGGAGGCACGCU--CGGCugc-CAC- -5' |
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29940 | 3' | -56.6 | NC_006273.1 | + | 179976 | 0.66 | 0.951188 |
Target: 5'- uGCAggUauuugUgGUGCGGGCCGugcCGGUGg -3' miRNA: 3'- -UGUuuGga---GgCACGCUCGGCu--GCCAC- -5' |
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29940 | 3' | -56.6 | NC_006273.1 | + | 170863 | 0.67 | 0.928662 |
Target: 5'- gGCAggGACa-CCGaUGuCGAGCCGGCGGg- -3' miRNA: 3'- -UGU--UUGgaGGC-AC-GCUCGGCUGCCac -5' |
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29940 | 3' | -56.6 | NC_006273.1 | + | 167417 | 0.66 | 0.942397 |
Target: 5'- gACAGACUUCCacagugGCGGGCgcgcucuCGGCGGUc -3' miRNA: 3'- -UGUUUGGAGGca----CGCUCG-------GCUGCCAc -5' |
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29940 | 3' | -56.6 | NC_006273.1 | + | 162181 | 0.68 | 0.894322 |
Target: 5'- gGCGAAuCCUCCG-GCGGa--GGCGGUGg -3' miRNA: 3'- -UGUUU-GGAGGCaCGCUcggCUGCCAC- -5' |
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29940 | 3' | -56.6 | NC_006273.1 | + | 161110 | 0.71 | 0.759154 |
Target: 5'- gACGAcuaCUCCGUGUG-GCuCGACGGUa -3' miRNA: 3'- -UGUUug-GAGGCACGCuCG-GCUGCCAc -5' |
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29940 | 3' | -56.6 | NC_006273.1 | + | 158686 | 0.69 | 0.850063 |
Target: 5'- cACGGACCagCCGUgaggcagggcacacGCGGGUCGGCGGc- -3' miRNA: 3'- -UGUUUGGa-GGCA--------------CGCUCGGCUGCCac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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