miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29940 3' -56.6 NC_006273.1 + 45455 1.08 0.004782
Target:  5'- aACAAACCUCCGUGCGAGCCGACGGUGa -3'
miRNA:   3'- -UGUUUGGAGGCACGCUCGGCUGCCAC- -5'
29940 3' -56.6 NC_006273.1 + 1431 0.66 0.942838
Target:  5'- -uGGACC-CCGcgGcCGAcCCGACGGUGg -3'
miRNA:   3'- ugUUUGGaGGCa-C-GCUcGGCUGCCAC- -5'
29940 3' -56.6 NC_006273.1 + 209642 0.66 0.946703
Target:  5'- uACAGACCUCCGauggcugUGCGAGuaacuCCGuuGGg- -3'
miRNA:   3'- -UGUUUGGAGGC-------ACGCUC-----GGCugCCac -5'
29940 3' -56.6 NC_006273.1 + 140184 0.66 0.95504
Target:  5'- cGCcGACC-CCGgcuggGCG-GCCGAUGGg- -3'
miRNA:   3'- -UGuUUGGaGGCa----CGCuCGGCUGCCac -5'
29940 3' -56.6 NC_006273.1 + 202728 0.69 0.859838
Target:  5'- uCGGGCCUgCGacGCGAcGCCGACGGc- -3'
miRNA:   3'- uGUUUGGAgGCa-CGCU-CGGCUGCCac -5'
29940 3' -56.6 NC_006273.1 + 1773 0.68 0.867139
Target:  5'- uACAGACg-CCGggaagGCGAcugcaGCCGAUGGUGc -3'
miRNA:   3'- -UGUUUGgaGGCa----CGCU-----CGGCUGCCAC- -5'
29940 3' -56.6 NC_006273.1 + 6149 0.68 0.881143
Target:  5'- ---cACC-CCGUGUGuacacGCCGugGGUGc -3'
miRNA:   3'- uguuUGGaGGCACGCu----CGGCugCCAC- -5'
29940 3' -56.6 NC_006273.1 + 44477 0.68 0.881143
Target:  5'- aACAAGCCgcgcgacaaCGgGCGAG-CGGCGGUGa -3'
miRNA:   3'- -UGUUUGGag-------GCaCGCUCgGCUGCCAC- -5'
29940 3' -56.6 NC_006273.1 + 1735 0.68 0.900594
Target:  5'- -gGAGCUgcgCCGgcgGUGGGCCggcacGACGGUGg -3'
miRNA:   3'- ugUUUGGa--GGCa--CGCUCGG-----CUGCCAC- -5'
29940 3' -56.6 NC_006273.1 + 170863 0.67 0.928662
Target:  5'- gGCAggGACa-CCGaUGuCGAGCCGGCGGg- -3'
miRNA:   3'- -UGU--UUGgaGGC-AC-GCUCGGCUGCCac -5'
29940 3' -56.6 NC_006273.1 + 5860 0.67 0.918099
Target:  5'- gGCGGcCCUCCGUucggcuCGGGUCGugGGUc -3'
miRNA:   3'- -UGUUuGGAGGCAc-----GCUCGGCugCCAc -5'
29940 3' -56.6 NC_006273.1 + 5943 0.68 0.894322
Target:  5'- cGCAAucgcACCacaggCCGUGCGAGUCGugGa-- -3'
miRNA:   3'- -UGUU----UGGa----GGCACGCUCGGCugCcac -5'
29940 3' -56.6 NC_006273.1 + 190358 0.75 0.498115
Target:  5'- aGCAGGCCgccgCCGUGgGGGCCG-CGGa- -3'
miRNA:   3'- -UGUUUGGa---GGCACgCUCGGCuGCCac -5'
29940 3' -56.6 NC_006273.1 + 123491 0.67 0.922962
Target:  5'- cGCAGGCCcUCG-GCGuacugcaGGCUGugGGUGg -3'
miRNA:   3'- -UGUUUGGaGGCaCGC-------UCGGCugCCAC- -5'
29940 3' -56.6 NC_006273.1 + 196643 0.71 0.749894
Target:  5'- gUAGGCCgUCagGUGCGAgGCCGaACGGUGa -3'
miRNA:   3'- uGUUUGG-AGg-CACGCU-CGGC-UGCCAC- -5'
29940 3' -56.6 NC_006273.1 + 91278 0.68 0.887838
Target:  5'- cGCAGACCcUCGUcGCGAGCCagcGCGGc- -3'
miRNA:   3'- -UGUUUGGaGGCA-CGCUCGGc--UGCCac -5'
29940 3' -56.6 NC_006273.1 + 194464 0.67 0.923491
Target:  5'- cGCAcGCgUCCGccCGAGCgcaGACGGUGa -3'
miRNA:   3'- -UGUuUGgAGGCacGCUCGg--CUGCCAC- -5'
29940 3' -56.6 NC_006273.1 + 44732 0.66 0.942838
Target:  5'- cCGAACCgCCG-GcCGAGCUggaGAUGGUGg -3'
miRNA:   3'- uGUUUGGaGGCaC-GCUCGG---CUGCCAC- -5'
29940 3' -56.6 NC_006273.1 + 214756 0.69 0.844669
Target:  5'- -gGAGCa-CCGUGgGuGCCGGCGGUa -3'
miRNA:   3'- ugUUUGgaGGCACgCuCGGCUGCCAc -5'
29940 3' -56.6 NC_006273.1 + 211710 0.68 0.874242
Target:  5'- gGCGGGCCUCUG-G-GGGCCGcACGGa- -3'
miRNA:   3'- -UGUUUGGAGGCaCgCUCGGC-UGCCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.