miRNA display CGI


Results 1 - 20 of 309 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29940 5' -59.4 NC_006273.1 + 99268 0.66 0.887379
Target:  5'- uCCGCCGcUCGCGgucaaaagcgcgaucGCCGcccACGGCGuccucgGCg -3'
miRNA:   3'- uGGUGGC-AGCGU---------------CGGC---UGCCGCua----CG- -5'
29940 5' -59.4 NC_006273.1 + 118973 0.66 0.88478
Target:  5'- aGCCGCCcaCGUAGaCCGGCGccacagccuGCGAcUGCu -3'
miRNA:   3'- -UGGUGGcaGCGUC-GGCUGC---------CGCU-ACG- -5'
29940 5' -59.4 NC_006273.1 + 194894 0.66 0.88478
Target:  5'- aGCC-CUGUccCGCA-CCGGCGGCGGUc- -3'
miRNA:   3'- -UGGuGGCA--GCGUcGGCUGCCGCUAcg -5'
29940 5' -59.4 NC_006273.1 + 102512 0.66 0.88478
Target:  5'- uGCCugUGUCuaGGCUGcucuCGG-GAUGCg -3'
miRNA:   3'- -UGGugGCAGcgUCGGCu---GCCgCUACG- -5'
29940 5' -59.4 NC_006273.1 + 139106 0.66 0.88478
Target:  5'- uUUugCGUCGCccUCGACGGCGGUa- -3'
miRNA:   3'- uGGugGCAGCGucGGCUGCCGCUAcg -5'
29940 5' -59.4 NC_006273.1 + 920 0.66 0.88478
Target:  5'- cCCGCCccucgGUCGCGGCCG-CGGgGccGg -3'
miRNA:   3'- uGGUGG-----CAGCGUCGGCuGCCgCuaCg -5'
29940 5' -59.4 NC_006273.1 + 87757 0.66 0.88478
Target:  5'- gGCCGuuGUCGCGGCguuUGcUGGCGGuuacaaccggcUGCg -3'
miRNA:   3'- -UGGUggCAGCGUCG---GCuGCCGCU-----------ACG- -5'
29940 5' -59.4 NC_006273.1 + 234832 0.66 0.88478
Target:  5'- aGCC-CUGUccCGCA-CCGGCGGCGGUc- -3'
miRNA:   3'- -UGGuGGCA--GCGUcGGCUGCCGCUAcg -5'
29940 5' -59.4 NC_006273.1 + 198150 0.66 0.88478
Target:  5'- cGCCGCCGUCGCGccuuccucuGCCugggcACGcGCGucgGCc -3'
miRNA:   3'- -UGGUGGCAGCGU---------CGGc----UGC-CGCua-CG- -5'
29940 5' -59.4 NC_006273.1 + 40915 0.66 0.88478
Target:  5'- gACgCACCGUCuGCgcucgGGCgGACGcGUGcgGCg -3'
miRNA:   3'- -UG-GUGGCAG-CG-----UCGgCUGC-CGCuaCG- -5'
29940 5' -59.4 NC_006273.1 + 195812 0.66 0.88478
Target:  5'- cCCGCCccucgGUCGCGGCCG-CGGgGccGg -3'
miRNA:   3'- uGGUGG-----CAGCGUCGGCuGCCgCuaCg -5'
29940 5' -59.4 NC_006273.1 + 1 0.66 0.88478
Target:  5'- aGCC-CUGUccCGCA-CCGGCGGCGGUc- -3'
miRNA:   3'- -UGGuGGCA--GCGUcGGCUGCCGCUAcg -5'
29940 5' -59.4 NC_006273.1 + 218605 0.66 0.88478
Target:  5'- uUCACCGgcuagaCGCuGCaggGGCGGCGA-GCg -3'
miRNA:   3'- uGGUGGCa-----GCGuCGg--CUGCCGCUaCG- -5'
29940 5' -59.4 NC_006273.1 + 86568 0.66 0.882809
Target:  5'- cGCCGCCGgccggucgcUCGCgaaaAGCCGuggcauugagacgcACGGCGccGCc -3'
miRNA:   3'- -UGGUGGC---------AGCG----UCGGC--------------UGCCGCuaCG- -5'
29940 5' -59.4 NC_006273.1 + 28550 0.66 0.88082
Target:  5'- cGCCACugcgcgaacgCGUggaugugcaUGCAGCCGGCcagcgcucuaagcgaGGCGGUGUg -3'
miRNA:   3'- -UGGUG----------GCA---------GCGUCGGCUG---------------CCGCUACG- -5'
29940 5' -59.4 NC_006273.1 + 50921 0.66 0.878141
Target:  5'- uGCUACCGuUCGCAgccacacccGCCGAaauuuuuacCGGUGAcGCc -3'
miRNA:   3'- -UGGUGGC-AGCGU---------CGGCU---------GCCGCUaCG- -5'
29940 5' -59.4 NC_006273.1 + 149557 0.66 0.878141
Target:  5'- gGCgGCgGUgGUAGUggCGugGGCGAcGCg -3'
miRNA:   3'- -UGgUGgCAgCGUCG--GCugCCGCUaCG- -5'
29940 5' -59.4 NC_006273.1 + 153183 0.66 0.878141
Target:  5'- gACCACCGUCGUcugauGCauccACGGCGGcuccGCc -3'
miRNA:   3'- -UGGUGGCAGCGu----CGgc--UGCCGCUa---CG- -5'
29940 5' -59.4 NC_006273.1 + 130889 0.66 0.878141
Target:  5'- gGCCGCCGaUCGCGuUCGACGuuaCGuGUGCa -3'
miRNA:   3'- -UGGUGGC-AGCGUcGGCUGCc--GC-UACG- -5'
29940 5' -59.4 NC_006273.1 + 213916 0.66 0.878141
Target:  5'- aGCCACCagcugaGCAcGCUGAgGGCGAcggugGCg -3'
miRNA:   3'- -UGGUGGcag---CGU-CGGCUgCCGCUa----CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.