miRNA display CGI


Results 1 - 20 of 309 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29940 5' -59.4 NC_006273.1 + 115582 0.66 0.871307
Target:  5'- uGCUGCUGUUGUGGgUG-CGGaCGGUGCg -3'
miRNA:   3'- -UGGUGGCAGCGUCgGCuGCC-GCUACG- -5'
29940 5' -59.4 NC_006273.1 + 117820 0.66 0.855605
Target:  5'- aACCACCGUC-CGGaugggagcguuaCGACGGUGGUc- -3'
miRNA:   3'- -UGGUGGCAGcGUCg-----------GCUGCCGCUAcg -5'
29940 5' -59.4 NC_006273.1 + 115341 0.66 0.871307
Target:  5'- uCCuCCGUCcucuGCA-CCGACGGCGAa-- -3'
miRNA:   3'- uGGuGGCAG----CGUcGGCUGCCGCUacg -5'
29940 5' -59.4 NC_006273.1 + 144395 0.66 0.85707
Target:  5'- gGCCuuCGUCaGCGGCUGucugccCGGCGccGCg -3'
miRNA:   3'- -UGGugGCAG-CGUCGGCu-----GCCGCuaCG- -5'
29940 5' -59.4 NC_006273.1 + 162755 0.66 0.864281
Target:  5'- aGCaguCCGgUGguGCUGGCGGUGGUGg -3'
miRNA:   3'- -UGgu-GGCaGCguCGGCUGCCGCUACg -5'
29940 5' -59.4 NC_006273.1 + 34246 0.66 0.864281
Target:  5'- gGCCGCCGgcaggcaGCGGCCGAUGaGUuc-GCg -3'
miRNA:   3'- -UGGUGGCag-----CGUCGGCUGC-CGcuaCG- -5'
29940 5' -59.4 NC_006273.1 + 95146 0.66 0.864281
Target:  5'- cGCCcgaACCGUCGCGGCUuGCuGGCccuggGCg -3'
miRNA:   3'- -UGG---UGGCAGCGUCGGcUG-CCGcua--CG- -5'
29940 5' -59.4 NC_006273.1 + 56115 0.66 0.863569
Target:  5'- cGCCGCCGgauuUCGUcgaaacgGGCCGcggagGCGGCGAccgacGCg -3'
miRNA:   3'- -UGGUGGC----AGCG-------UCGGC-----UGCCGCUa----CG- -5'
29940 5' -59.4 NC_006273.1 + 20368 0.66 0.864281
Target:  5'- -aCACCG--GCGGaCCGcgaccCGGCGGUGCg -3'
miRNA:   3'- ugGUGGCagCGUC-GGCu----GCCGCUACG- -5'
29940 5' -59.4 NC_006273.1 + 99994 0.66 0.85707
Target:  5'- cCCGCUGUUGUccGCCGGCaguGGCGugguUGCu -3'
miRNA:   3'- uGGUGGCAGCGu-CGGCUG---CCGCu---ACG- -5'
29940 5' -59.4 NC_006273.1 + 170855 0.66 0.871307
Target:  5'- -aCACCGUCGUuacaAGCau-CGGCcGUGCg -3'
miRNA:   3'- ugGUGGCAGCG----UCGgcuGCCGcUACG- -5'
29940 5' -59.4 NC_006273.1 + 130766 0.66 0.867114
Target:  5'- uCCGaggaCGUCGCGGCuaucaccgucagaauCGACGGUGGUuucgGCg -3'
miRNA:   3'- uGGUg---GCAGCGUCG---------------GCUGCCGCUA----CG- -5'
29940 5' -59.4 NC_006273.1 + 144188 0.66 0.871307
Target:  5'- gGCC-CUGgagcgCGUGGCCGA--GCGGUGCg -3'
miRNA:   3'- -UGGuGGCa----GCGUCGGCUgcCGCUACG- -5'
29940 5' -59.4 NC_006273.1 + 191926 0.66 0.85707
Target:  5'- aACCuggaggaGUCGCGGCaUGACGGCGcccaaGUGUg -3'
miRNA:   3'- -UGGugg----CAGCGUCG-GCUGCCGC-----UACG- -5'
29940 5' -59.4 NC_006273.1 + 167679 0.66 0.85707
Target:  5'- gGCCGCCGuUCGUcGUC-ACGGgGcgGCg -3'
miRNA:   3'- -UGGUGGC-AGCGuCGGcUGCCgCuaCG- -5'
29940 5' -59.4 NC_006273.1 + 148775 0.66 0.871307
Target:  5'- -gUACCGagGCcGgCGGCGGCGccGUGCg -3'
miRNA:   3'- ugGUGGCagCGuCgGCUGCCGC--UACG- -5'
29940 5' -59.4 NC_006273.1 + 155568 0.66 0.85707
Target:  5'- cGCgGCCuuUCGCGGCUGGUGcuacGCGAUGCg -3'
miRNA:   3'- -UGgUGGc-AGCGUCGGCUGC----CGCUACG- -5'
29940 5' -59.4 NC_006273.1 + 29130 0.66 0.864281
Target:  5'- gGCCAgaaGagGCGGCCuuGACGGCGuugGCa -3'
miRNA:   3'- -UGGUgg-CagCGUCGG--CUGCCGCua-CG- -5'
29940 5' -59.4 NC_006273.1 + 139538 0.66 0.85707
Target:  5'- gGCCGaaucuCCG-CGCAacaugauggcGgCGGCGGUGGUGCg -3'
miRNA:   3'- -UGGU-----GGCaGCGU----------CgGCUGCCGCUACG- -5'
29940 5' -59.4 NC_006273.1 + 99268 0.66 0.887379
Target:  5'- uCCGCCGcUCGCGgucaaaagcgcgaucGCCGcccACGGCGuccucgGCg -3'
miRNA:   3'- uGGUGGC-AGCGU---------------CGGC---UGCCGCua----CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.