miRNA display CGI


Results 1 - 20 of 309 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29940 5' -59.4 NC_006273.1 + 45489 1.1 0.002275
Target:  5'- aACCACCGUCGCAGCCGACGGCGAUGCc -3'
miRNA:   3'- -UGGUGGCAGCGUCGGCUGCCGCUACG- -5'
29940 5' -59.4 NC_006273.1 + 77151 0.84 0.124981
Target:  5'- aACCGCCGUCGcCGGCCGACGcGCGcccGCg -3'
miRNA:   3'- -UGGUGGCAGC-GUCGGCUGC-CGCua-CG- -5'
29940 5' -59.4 NC_006273.1 + 202560 0.82 0.155585
Target:  5'- gGCCGgCGUgGCGGCCGACGGCagcGUGCu -3'
miRNA:   3'- -UGGUgGCAgCGUCGGCUGCCGc--UACG- -5'
29940 5' -59.4 NC_006273.1 + 232976 0.82 0.159377
Target:  5'- aGCCGCCG-CGCGGCCucGGCGGCGG-GCg -3'
miRNA:   3'- -UGGUGGCaGCGUCGG--CUGCCGCUaCG- -5'
29940 5' -59.4 NC_006273.1 + 38083 0.82 0.159377
Target:  5'- aGCCGCCG-CGCGGCCucGGCGGCGG-GCg -3'
miRNA:   3'- -UGGUGGCaGCGUCGG--CUGCCGCUaCG- -5'
29940 5' -59.4 NC_006273.1 + 185404 0.81 0.179611
Target:  5'- cUCGCCGUCGCGGCCGAC-GUGGUGg -3'
miRNA:   3'- uGGUGGCAGCGUCGGCUGcCGCUACg -5'
29940 5' -59.4 NC_006273.1 + 161617 0.79 0.237634
Target:  5'- cACCAUgGUCGCcGCUGGCGGCGccGCu -3'
miRNA:   3'- -UGGUGgCAGCGuCGGCUGCCGCuaCG- -5'
29940 5' -59.4 NC_006273.1 + 93311 0.79 0.243119
Target:  5'- aGCCgugguaACCGUCGCcGCUGGCGGCGcUGCc -3'
miRNA:   3'- -UGG------UGGCAGCGuCGGCUGCCGCuACG- -5'
29940 5' -59.4 NC_006273.1 + 1857 0.78 0.260208
Target:  5'- cGCCGCaccccgCGUCGCuGCUGACGGCcGUGCg -3'
miRNA:   3'- -UGGUG------GCAGCGuCGGCUGCCGcUACG- -5'
29940 5' -59.4 NC_006273.1 + 196749 0.78 0.260208
Target:  5'- cGCCGCaccccgCGUCGCuGCUGACGGCcGUGCg -3'
miRNA:   3'- -UGGUG------GCAGCGuCGGCUGCCGcUACG- -5'
29940 5' -59.4 NC_006273.1 + 147960 0.78 0.266118
Target:  5'- aGCCcCCGUCGCccgaggcggaggAGCCGGCGGCGGcgGUg -3'
miRNA:   3'- -UGGuGGCAGCG------------UCGGCUGCCGCUa-CG- -5'
29940 5' -59.4 NC_006273.1 + 94712 0.78 0.272136
Target:  5'- cCCGCCGUCGUcGCCuGCGGCGuugGCg -3'
miRNA:   3'- uGGUGGCAGCGuCGGcUGCCGCua-CG- -5'
29940 5' -59.4 NC_006273.1 + 72458 0.78 0.2845
Target:  5'- aACgCACCGUCGguGCCGGCGGCc---- -3'
miRNA:   3'- -UG-GUGGCAGCguCGGCUGCCGcuacg -5'
29940 5' -59.4 NC_006273.1 + 20120 0.77 0.290846
Target:  5'- uCCACCaUCGCAGCCGGCaGagGAUGCa -3'
miRNA:   3'- uGGUGGcAGCGUCGGCUGcCg-CUACG- -5'
29940 5' -59.4 NC_006273.1 + 197137 0.77 0.323544
Target:  5'- cACCGCCGUCGUuGCCGGuccccguuuccucCGGCGccGCg -3'
miRNA:   3'- -UGGUGGCAGCGuCGGCU-------------GCCGCuaCG- -5'
29940 5' -59.4 NC_006273.1 + 87603 0.76 0.33125
Target:  5'- cGCCGuCCGUCGCcGCUGuuGCGGCGGUaGCu -3'
miRNA:   3'- -UGGU-GGCAGCGuCGGC--UGCCGCUA-CG- -5'
29940 5' -59.4 NC_006273.1 + 201957 0.76 0.338373
Target:  5'- cGCCgggGCUGUCGCGcgccGCCGACgcccgaGGCGGUGCg -3'
miRNA:   3'- -UGG---UGGCAGCGU----CGGCUG------CCGCUACG- -5'
29940 5' -59.4 NC_006273.1 + 104603 0.76 0.338373
Target:  5'- aACCACCGUCGauuCUGACGGUGAUaGCc -3'
miRNA:   3'- -UGGUGGCAGCgucGGCUGCCGCUA-CG- -5'
29940 5' -59.4 NC_006273.1 + 38395 0.76 0.352949
Target:  5'- cGCCGuCCGUCGCcGCCGcuGCGGUGGcgGCa -3'
miRNA:   3'- -UGGU-GGCAGCGuCGGC--UGCCGCUa-CG- -5'
29940 5' -59.4 NC_006273.1 + 30859 0.76 0.360403
Target:  5'- cGCCaggugaGCCGUcCGCuGCCGAgGGCGAUGa -3'
miRNA:   3'- -UGG------UGGCA-GCGuCGGCUgCCGCUACg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.