miRNA display CGI


Results 21 - 40 of 309 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29940 5' -59.4 NC_006273.1 + 117344 0.76 0.367965
Target:  5'- cACCGCCGUCGCuuucucccucggAGCCGGCagaGGCGgcGUc -3'
miRNA:   3'- -UGGUGGCAGCG------------UCGGCUG---CCGCuaCG- -5'
29940 5' -59.4 NC_006273.1 + 213103 0.75 0.375635
Target:  5'- uACCGCUGcCGCAGaugagcgcaCCGACGGCGGaGCc -3'
miRNA:   3'- -UGGUGGCaGCGUC---------GGCUGCCGCUaCG- -5'
29940 5' -59.4 NC_006273.1 + 34386 0.75 0.375635
Target:  5'- cGCCACCGUUGaC-GUgGGCGGCGAUGa -3'
miRNA:   3'- -UGGUGGCAGC-GuCGgCUGCCGCUACg -5'
29940 5' -59.4 NC_006273.1 + 203086 0.75 0.375635
Target:  5'- cCCGCUGUCGCGGCggucgCGACGGUGAcgGUc -3'
miRNA:   3'- uGGUGGCAGCGUCG-----GCUGCCGCUa-CG- -5'
29940 5' -59.4 NC_006273.1 + 72303 0.75 0.383413
Target:  5'- gGCCGCCG-CGCAGC--GCGGCGcugaGUGCa -3'
miRNA:   3'- -UGGUGGCaGCGUCGgcUGCCGC----UACG- -5'
29940 5' -59.4 NC_006273.1 + 116578 0.75 0.391297
Target:  5'- cACgGCCGUUGUAGgacaCGuuGCGGCGAUGCa -3'
miRNA:   3'- -UGgUGGCAGCGUCg---GC--UGCCGCUACG- -5'
29940 5' -59.4 NC_006273.1 + 213846 0.75 0.391297
Target:  5'- cGCCGCCGUCcucgaaacgccaGCGcCCGcCGGCGAUGUa -3'
miRNA:   3'- -UGGUGGCAG------------CGUcGGCuGCCGCUACG- -5'
29940 5' -59.4 NC_006273.1 + 163845 0.75 0.391297
Target:  5'- gUCGCCGgcaGCGGCCGcCGGCGAggGCc -3'
miRNA:   3'- uGGUGGCag-CGUCGGCuGCCGCUa-CG- -5'
29940 5' -59.4 NC_006273.1 + 120015 0.75 0.399286
Target:  5'- gUCACCGUCGCGuCCGACGcGaCGGUGUu -3'
miRNA:   3'- uGGUGGCAGCGUcGGCUGC-C-GCUACG- -5'
29940 5' -59.4 NC_006273.1 + 142802 0.75 0.399286
Target:  5'- aGCCGCCGUCGCuGGUgGGCacgGGCG-UGCa -3'
miRNA:   3'- -UGGUGGCAGCG-UCGgCUG---CCGCuACG- -5'
29940 5' -59.4 NC_006273.1 + 186745 0.75 0.399286
Target:  5'- gACCGCUG-CGUGcGCCGACGGCGuuucaagguGUGCg -3'
miRNA:   3'- -UGGUGGCaGCGU-CGGCUGCCGC---------UACG- -5'
29940 5' -59.4 NC_006273.1 + 202860 0.75 0.407378
Target:  5'- uCCACCGUcaauuaCGCAGCUGACGGUG-UGa -3'
miRNA:   3'- uGGUGGCA------GCGUCGGCUGCCGCuACg -5'
29940 5' -59.4 NC_006273.1 + 59592 0.75 0.414749
Target:  5'- uGCCuACUGUUcucgauaGCGGCCGucaacgccACGGCGAUGCg -3'
miRNA:   3'- -UGG-UGGCAG-------CGUCGGC--------UGCCGCUACG- -5'
29940 5' -59.4 NC_006273.1 + 167165 0.75 0.415573
Target:  5'- uGCCGCCGUUgGUGGCC-ACGGCGG-GCg -3'
miRNA:   3'- -UGGUGGCAG-CGUCGGcUGCCGCUaCG- -5'
29940 5' -59.4 NC_006273.1 + 87492 0.74 0.423868
Target:  5'- gGCCAgCGcagCGUAGCUGGCG-CGAUGCa -3'
miRNA:   3'- -UGGUgGCa--GCGUCGGCUGCcGCUACG- -5'
29940 5' -59.4 NC_006273.1 + 65548 0.74 0.423868
Target:  5'- uACCACCGUCcuaCAGCUG-CGGCGAagggGCc -3'
miRNA:   3'- -UGGUGGCAGc--GUCGGCuGCCGCUa---CG- -5'
29940 5' -59.4 NC_006273.1 + 186314 0.74 0.432261
Target:  5'- aACCACCGUUucaGCGGCCGGCgugaGGCcaucGUGCg -3'
miRNA:   3'- -UGGUGGCAG---CGUCGGCUG----CCGc---UACG- -5'
29940 5' -59.4 NC_006273.1 + 88543 0.74 0.449333
Target:  5'- cACCACCGUgGUAGCC-AUGGCccuGUGCu -3'
miRNA:   3'- -UGGUGGCAgCGUCGGcUGCCGc--UACG- -5'
29940 5' -59.4 NC_006273.1 + 197303 0.74 0.449333
Target:  5'- cCCGCCGcCGaGGCCGcGCGGCGGcUGCu -3'
miRNA:   3'- uGGUGGCaGCgUCGGC-UGCCGCU-ACG- -5'
29940 5' -59.4 NC_006273.1 + 68810 0.74 0.449333
Target:  5'- -aC-CCGgacgCGUAGCCGGCGGCGccGCg -3'
miRNA:   3'- ugGuGGCa---GCGUCGGCUGCCGCuaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.