Results 21 - 40 of 309 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
29940 | 5' | -59.4 | NC_006273.1 | + | 50921 | 0.66 | 0.878141 |
Target: 5'- uGCUACCGuUCGCAgccacacccGCCGAaauuuuuacCGGUGAcGCc -3' miRNA: 3'- -UGGUGGC-AGCGU---------CGGCU---------GCCGCUaCG- -5' |
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29940 | 5' | -59.4 | NC_006273.1 | + | 115582 | 0.66 | 0.871307 |
Target: 5'- uGCUGCUGUUGUGGgUG-CGGaCGGUGCg -3' miRNA: 3'- -UGGUGGCAGCGUCgGCuGCC-GCUACG- -5' |
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29940 | 5' | -59.4 | NC_006273.1 | + | 11192 | 0.66 | 0.871307 |
Target: 5'- aACCACC-UCuCGGCUGAguuuggGGUGAUGCu -3' miRNA: 3'- -UGGUGGcAGcGUCGGCUg-----CCGCUACG- -5' |
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29940 | 5' | -59.4 | NC_006273.1 | + | 151339 | 0.66 | 0.871307 |
Target: 5'- cCCGCCGcuUCGCGGCUcauuUGGCGccgGCg -3' miRNA: 3'- uGGUGGC--AGCGUCGGcu--GCCGCua-CG- -5' |
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29940 | 5' | -59.4 | NC_006273.1 | + | 84037 | 0.66 | 0.871307 |
Target: 5'- gGCgCGCCGgCGCcaaaugAGCCGcgaaGCGGCGG-GCg -3' miRNA: 3'- -UG-GUGGCaGCG------UCGGC----UGCCGCUaCG- -5' |
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29940 | 5' | -59.4 | NC_006273.1 | + | 71792 | 0.66 | 0.871307 |
Target: 5'- gUUACUG--GCAGCCG-CGGCGGUGg -3' miRNA: 3'- uGGUGGCagCGUCGGCuGCCGCUACg -5' |
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29940 | 5' | -59.4 | NC_006273.1 | + | 85723 | 0.66 | 0.871307 |
Target: 5'- aGCCACCuaaCGCcGCgGGCGGCG-UGg -3' miRNA: 3'- -UGGUGGca-GCGuCGgCUGCCGCuACg -5' |
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29940 | 5' | -59.4 | NC_006273.1 | + | 144188 | 0.66 | 0.871307 |
Target: 5'- gGCC-CUGgagcgCGUGGCCGA--GCGGUGCg -3' miRNA: 3'- -UGGuGGCa----GCGUCGGCUgcCGCUACG- -5' |
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29940 | 5' | -59.4 | NC_006273.1 | + | 148775 | 0.66 | 0.871307 |
Target: 5'- -gUACCGagGCcGgCGGCGGCGccGUGCg -3' miRNA: 3'- ugGUGGCagCGuCgGCUGCCGC--UACG- -5' |
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29940 | 5' | -59.4 | NC_006273.1 | + | 170855 | 0.66 | 0.871307 |
Target: 5'- -aCACCGUCGUuacaAGCau-CGGCcGUGCg -3' miRNA: 3'- ugGUGGCAGCG----UCGgcuGCCGcUACG- -5' |
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29940 | 5' | -59.4 | NC_006273.1 | + | 113732 | 0.66 | 0.871307 |
Target: 5'- -gCGCCGgaGguGgCGACGGCGGcgGCg -3' miRNA: 3'- ugGUGGCagCguCgGCUGCCGCUa-CG- -5' |
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29940 | 5' | -59.4 | NC_006273.1 | + | 115341 | 0.66 | 0.871307 |
Target: 5'- uCCuCCGUCcucuGCA-CCGACGGCGAa-- -3' miRNA: 3'- uGGuGGCAG----CGUcGGCUGCCGCUacg -5' |
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29940 | 5' | -59.4 | NC_006273.1 | + | 101340 | 0.66 | 0.869219 |
Target: 5'- uAUCGCCGUgGagggcaacaccaacCAGgCGGCGGCcGUGCg -3' miRNA: 3'- -UGGUGGCAgC--------------GUCgGCUGCCGcUACG- -5' |
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29940 | 5' | -59.4 | NC_006273.1 | + | 130766 | 0.66 | 0.867114 |
Target: 5'- uCCGaggaCGUCGCGGCuaucaccgucagaauCGACGGUGGUuucgGCg -3' miRNA: 3'- uGGUg---GCAGCGUCG---------------GCUGCCGCUA----CG- -5' |
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29940 | 5' | -59.4 | NC_006273.1 | + | 133735 | 0.66 | 0.864281 |
Target: 5'- gGCCgaguagcguGCCGUCGUgccuucGGCCaGCGugacGCGGUGCa -3' miRNA: 3'- -UGG---------UGGCAGCG------UCGGcUGC----CGCUACG- -5' |
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29940 | 5' | -59.4 | NC_006273.1 | + | 152875 | 0.66 | 0.864281 |
Target: 5'- gGCCGuuGgCGUagccauuggGGCCGugGGUGgcGCg -3' miRNA: 3'- -UGGUggCaGCG---------UCGGCugCCGCuaCG- -5' |
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29940 | 5' | -59.4 | NC_006273.1 | + | 29130 | 0.66 | 0.864281 |
Target: 5'- gGCCAgaaGagGCGGCCuuGACGGCGuugGCa -3' miRNA: 3'- -UGGUgg-CagCGUCGG--CUGCCGCua-CG- -5' |
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29940 | 5' | -59.4 | NC_006273.1 | + | 133626 | 0.66 | 0.864281 |
Target: 5'- gACCGCCcgacgCGCccauGCCGcCGGCGAccGCc -3' miRNA: 3'- -UGGUGGca---GCGu---CGGCuGCCGCUa-CG- -5' |
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29940 | 5' | -59.4 | NC_006273.1 | + | 34246 | 0.66 | 0.864281 |
Target: 5'- gGCCGCCGgcaggcaGCGGCCGAUGaGUuc-GCg -3' miRNA: 3'- -UGGUGGCag-----CGUCGGCUGC-CGcuaCG- -5' |
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29940 | 5' | -59.4 | NC_006273.1 | + | 20368 | 0.66 | 0.864281 |
Target: 5'- -aCACCG--GCGGaCCGcgaccCGGCGGUGCg -3' miRNA: 3'- ugGUGGCagCGUC-GGCu----GCCGCUACG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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