miRNA display CGI


Results 41 - 60 of 309 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29940 5' -59.4 NC_006273.1 + 20368 0.66 0.864281
Target:  5'- -aCACCG--GCGGaCCGcgaccCGGCGGUGCg -3'
miRNA:   3'- ugGUGGCagCGUC-GGCu----GCCGCUACG- -5'
29940 5' -59.4 NC_006273.1 + 29130 0.66 0.864281
Target:  5'- gGCCAgaaGagGCGGCCuuGACGGCGuugGCa -3'
miRNA:   3'- -UGGUgg-CagCGUCGG--CUGCCGCua-CG- -5'
29940 5' -59.4 NC_006273.1 + 56115 0.66 0.863569
Target:  5'- cGCCGCCGgauuUCGUcgaaacgGGCCGcggagGCGGCGAccgacGCg -3'
miRNA:   3'- -UGGUGGC----AGCG-------UCGGC-----UGCCGCUa----CG- -5'
29940 5' -59.4 NC_006273.1 + 213450 0.66 0.862854
Target:  5'- cGCCGCCuagCGCcgucuacccgauGCCGGCGGC--UGCa -3'
miRNA:   3'- -UGGUGGca-GCGu-----------CGGCUGCCGcuACG- -5'
29940 5' -59.4 NC_006273.1 + 144395 0.66 0.85707
Target:  5'- gGCCuuCGUCaGCGGCUGucugccCGGCGccGCg -3'
miRNA:   3'- -UGGugGCAG-CGUCGGCu-----GCCGCuaCG- -5'
29940 5' -59.4 NC_006273.1 + 191926 0.66 0.85707
Target:  5'- aACCuggaggaGUCGCGGCaUGACGGCGcccaaGUGUg -3'
miRNA:   3'- -UGGugg----CAGCGUCG-GCUGCCGC-----UACG- -5'
29940 5' -59.4 NC_006273.1 + 139538 0.66 0.85707
Target:  5'- gGCCGaaucuCCG-CGCAacaugauggcGgCGGCGGUGGUGCg -3'
miRNA:   3'- -UGGU-----GGCaGCGU----------CgGCUGCCGCUACG- -5'
29940 5' -59.4 NC_006273.1 + 219659 0.66 0.85707
Target:  5'- cGCCAgCGUCGCcaAGCCGAUugaGGCa---- -3'
miRNA:   3'- -UGGUgGCAGCG--UCGGCUG---CCGcuacg -5'
29940 5' -59.4 NC_006273.1 + 167679 0.66 0.85707
Target:  5'- gGCCGCCGuUCGUcGUC-ACGGgGcgGCg -3'
miRNA:   3'- -UGGUGGC-AGCGuCGGcUGCCgCuaCG- -5'
29940 5' -59.4 NC_006273.1 + 155568 0.66 0.85707
Target:  5'- cGCgGCCuuUCGCGGCUGGUGcuacGCGAUGCg -3'
miRNA:   3'- -UGgUGGc-AGCGUCGGCUGC----CGCUACG- -5'
29940 5' -59.4 NC_006273.1 + 87795 0.66 0.85707
Target:  5'- aACCG-CGUCGUgAGCCG-CGGCGGcucccaUGUa -3'
miRNA:   3'- -UGGUgGCAGCG-UCGGCuGCCGCU------ACG- -5'
29940 5' -59.4 NC_006273.1 + 72672 0.66 0.85707
Target:  5'- uGCCGCCGcCGCcauGGCCuuCGuGCuGUGCg -3'
miRNA:   3'- -UGGUGGCaGCG---UCGGcuGC-CGcUACG- -5'
29940 5' -59.4 NC_006273.1 + 99994 0.66 0.85707
Target:  5'- cCCGCUGUUGUccGCCGGCaguGGCGugguUGCu -3'
miRNA:   3'- uGGUGGCAGCGu-CGGCUG---CCGCu---ACG- -5'
29940 5' -59.4 NC_006273.1 + 133235 0.66 0.85707
Target:  5'- uAUCACCuGUaCGguGgCGACGGCGccacUGCc -3'
miRNA:   3'- -UGGUGG-CA-GCguCgGCUGCCGCu---ACG- -5'
29940 5' -59.4 NC_006273.1 + 117820 0.66 0.855605
Target:  5'- aACCACCGUC-CGGaugggagcguuaCGACGGUGGUc- -3'
miRNA:   3'- -UGGUGGCAGcGUCg-----------GCUGCCGCUAcg -5'
29940 5' -59.4 NC_006273.1 + 232720 0.67 0.852655
Target:  5'- aACCACCGUgGCcaaguccagucccagAGCuugagCGuCGGCGcgGCg -3'
miRNA:   3'- -UGGUGGCAgCG---------------UCG-----GCuGCCGCuaCG- -5'
29940 5' -59.4 NC_006273.1 + 93191 0.67 0.852655
Target:  5'- cGCCGCUcacgcuguccgagggGUCGCuGCCGcCGGUGAagagaGCg -3'
miRNA:   3'- -UGGUGG---------------CAGCGuCGGCuGCCGCUa----CG- -5'
29940 5' -59.4 NC_006273.1 + 73732 0.67 0.849677
Target:  5'- cGCCGCCaUgGguGgCGGCGGCGGccgagGCc -3'
miRNA:   3'- -UGGUGGcAgCguCgGCUGCCGCUa----CG- -5'
29940 5' -59.4 NC_006273.1 + 218261 0.67 0.849677
Target:  5'- uUCuCCGUcucccagggaaCGCGGUCGACGGCGuuccGCg -3'
miRNA:   3'- uGGuGGCA-----------GCGUCGGCUGCCGCua--CG- -5'
29940 5' -59.4 NC_006273.1 + 56861 0.67 0.849677
Target:  5'- uACCACCGcCGCcGCC-ACG-CGAuuUGCg -3'
miRNA:   3'- -UGGUGGCaGCGuCGGcUGCcGCU--ACG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.