miRNA display CGI


Results 1 - 20 of 309 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29940 5' -59.4 NC_006273.1 + 1 0.66 0.88478
Target:  5'- aGCC-CUGUccCGCA-CCGGCGGCGGUc- -3'
miRNA:   3'- -UGGuGGCA--GCGUcGGCUGCCGCUAcg -5'
29940 5' -59.4 NC_006273.1 + 920 0.66 0.88478
Target:  5'- cCCGCCccucgGUCGCGGCCG-CGGgGccGg -3'
miRNA:   3'- uGGUGG-----CAGCGUCGGCuGCCgCuaCg -5'
29940 5' -59.4 NC_006273.1 + 1331 0.7 0.673928
Target:  5'- -aCGCCG-CGCAGCCagaugaACGGCGuggGCg -3'
miRNA:   3'- ugGUGGCaGCGUCGGc-----UGCCGCua-CG- -5'
29940 5' -59.4 NC_006273.1 + 1778 0.71 0.596775
Target:  5'- -aCGCCGggaaggcgacUGCAGCCGAUGGUGcUGCu -3'
miRNA:   3'- ugGUGGCa---------GCGUCGGCUGCCGCuACG- -5'
29940 5' -59.4 NC_006273.1 + 1857 0.78 0.260208
Target:  5'- cGCCGCaccccgCGUCGCuGCUGACGGCcGUGCg -3'
miRNA:   3'- -UGGUG------GCAGCGuCGGCUGCCGcUACG- -5'
29940 5' -59.4 NC_006273.1 + 1901 0.68 0.784726
Target:  5'- aACCAgCGUCugugcuGCGGCUGGCuGGCGcuggGCg -3'
miRNA:   3'- -UGGUgGCAG------CGUCGGCUG-CCGCua--CG- -5'
29940 5' -59.4 NC_006273.1 + 1974 0.67 0.84667
Target:  5'- gGCCGgcgacggggacgaCGUCGC-GCCaGCGGCGAgcgGCa -3'
miRNA:   3'- -UGGUg------------GCAGCGuCGGcUGCCGCUa--CG- -5'
29940 5' -59.4 NC_006273.1 + 2197 0.69 0.72138
Target:  5'- -gCGCCGaCGguGaugguggguCCGACGGCGAUGg -3'
miRNA:   3'- ugGUGGCaGCguC---------GGCUGCCGCUACg -5'
29940 5' -59.4 NC_006273.1 + 2250 0.67 0.818406
Target:  5'- gACCguGCCGcgCGCcauGCUGGUGGUGGUGCu -3'
miRNA:   3'- -UGG--UGGCa-GCGu--CGGCUGCCGCUACG- -5'
29940 5' -59.4 NC_006273.1 + 2410 0.74 0.449333
Target:  5'- cCCGCCGcCGaGGCCGcGCGGCGGcUGCu -3'
miRNA:   3'- uGGUGGCaGCgUCGGC-UGCCGCU-ACG- -5'
29940 5' -59.4 NC_006273.1 + 4925 0.71 0.606405
Target:  5'- cAUCGCCGUCGCAucgccCCGA-GGCGcUGCu -3'
miRNA:   3'- -UGGUGGCAGCGUc----GGCUgCCGCuACG- -5'
29940 5' -59.4 NC_006273.1 + 8280 0.69 0.730696
Target:  5'- cGCaUACCcaCGCcGCCGugGGCGGUGa -3'
miRNA:   3'- -UG-GUGGcaGCGuCGGCugCCGCUACg -5'
29940 5' -59.4 NC_006273.1 + 8350 0.68 0.80184
Target:  5'- uGCCGCCGguugGUGGCUGGCGGCa---- -3'
miRNA:   3'- -UGGUGGCag--CGUCGGCUGCCGcuacg -5'
29940 5' -59.4 NC_006273.1 + 8380 0.68 0.767124
Target:  5'- gGCCAUCGU-GCAguucuaagcGCCGAgGGUaGGUGCg -3'
miRNA:   3'- -UGGUGGCAgCGU---------CGGCUgCCG-CUACG- -5'
29940 5' -59.4 NC_006273.1 + 11192 0.66 0.871307
Target:  5'- aACCACC-UCuCGGCUGAguuuggGGUGAUGCu -3'
miRNA:   3'- -UGGUGGcAGcGUCGGCUg-----CCGCUACG- -5'
29940 5' -59.4 NC_006273.1 + 20120 0.77 0.290846
Target:  5'- uCCACCaUCGCAGCCGGCaGagGAUGCa -3'
miRNA:   3'- uGGUGGcAGCGUCGGCUGcCg-CUACG- -5'
29940 5' -59.4 NC_006273.1 + 20368 0.66 0.864281
Target:  5'- -aCACCG--GCGGaCCGcgaccCGGCGGUGCg -3'
miRNA:   3'- ugGUGGCagCGUC-GGCu----GCCGCUACG- -5'
29940 5' -59.4 NC_006273.1 + 21305 0.68 0.758158
Target:  5'- cGCC-CUGUCuGCAGCCGGUGcGCGAccGCa -3'
miRNA:   3'- -UGGuGGCAG-CGUCGGCUGC-CGCUa-CG- -5'
29940 5' -59.4 NC_006273.1 + 21460 0.72 0.557597
Target:  5'- cGCCACCGUCGCccucagcgugcucAGCUGGUGGCucAUGCc -3'
miRNA:   3'- -UGGUGGCAGCG-------------UCGGCUGCCGc-UACG- -5'
29940 5' -59.4 NC_006273.1 + 21528 0.68 0.775982
Target:  5'- cAUCGCCGgcgggCGCuGGCguuucgaggaCGGCGGCGcgGCg -3'
miRNA:   3'- -UGGUGGCa----GCG-UCG----------GCUGCCGCuaCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.