miRNA display CGI


Results 21 - 40 of 309 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29940 5' -59.4 NC_006273.1 + 21698 0.73 0.521037
Target:  5'- uGCCAgCCGUCGCcgcaGGCCuuuguCGGCGcgGCu -3'
miRNA:   3'- -UGGU-GGCAGCG----UCGGcu---GCCGCuaCG- -5'
29940 5' -59.4 NC_006273.1 + 22275 0.67 0.849677
Target:  5'- uCCGCCGUCGguGCgcucaucugCGGCaGCGGUa- -3'
miRNA:   3'- uGGUGGCAGCguCG---------GCUGcCGCUAcg -5'
29940 5' -59.4 NC_006273.1 + 24413 0.67 0.818406
Target:  5'- aGCgGCCGUgGUGGCCGugcugGGCugGGUGCa -3'
miRNA:   3'- -UGgUGGCAgCGUCGGCug---CCG--CUACG- -5'
29940 5' -59.4 NC_006273.1 + 24684 0.68 0.767124
Target:  5'- cGCUGCCGUCGUccguuCCGACaGCuGGUGCu -3'
miRNA:   3'- -UGGUGGCAGCGuc---GGCUGcCG-CUACG- -5'
29940 5' -59.4 NC_006273.1 + 25167 0.7 0.673928
Target:  5'- aACUACCGUCGU--CCGACG-CGAUGa -3'
miRNA:   3'- -UGGUGGCAGCGucGGCUGCcGCUACg -5'
29940 5' -59.4 NC_006273.1 + 28550 0.66 0.88082
Target:  5'- cGCCACugcgcgaacgCGUggaugugcaUGCAGCCGGCcagcgcucuaagcgaGGCGGUGUg -3'
miRNA:   3'- -UGGUG----------GCA---------GCGUCGGCUG---------------CCGCUACG- -5'
29940 5' -59.4 NC_006273.1 + 29130 0.66 0.864281
Target:  5'- gGCCAgaaGagGCGGCCuuGACGGCGuugGCa -3'
miRNA:   3'- -UGGUgg-CagCGUCGG--CUGCCGCua-CG- -5'
29940 5' -59.4 NC_006273.1 + 30683 0.73 0.493563
Target:  5'- gGCCgGCCG-CGguGCCGGCGGCuAUGa -3'
miRNA:   3'- -UGG-UGGCaGCguCGGCUGCCGcUACg -5'
29940 5' -59.4 NC_006273.1 + 30736 0.69 0.734402
Target:  5'- gACCGCCuagugugcccUCGCugcccgagaacggcGCCGGCGGCGGUGg -3'
miRNA:   3'- -UGGUGGc---------AGCGu-------------CGGCUGCCGCUACg -5'
29940 5' -59.4 NC_006273.1 + 30859 0.76 0.360403
Target:  5'- cGCCaggugaGCCGUcCGCuGCCGAgGGCGAUGa -3'
miRNA:   3'- -UGG------UGGCA-GCGuCGGCUgCCGCUACg -5'
29940 5' -59.4 NC_006273.1 + 32297 0.68 0.766232
Target:  5'- gUCACCGUCGCGaccGCCGcgacaGCGGgGAauacuguUGCu -3'
miRNA:   3'- uGGUGGCAGCGU---CGGC-----UGCCgCU-------ACG- -5'
29940 5' -59.4 NC_006273.1 + 33240 0.67 0.818406
Target:  5'- gGCC-CCGggGCGGCgaCGACGGCGGg-- -3'
miRNA:   3'- -UGGuGGCagCGUCG--GCUGCCGCUacg -5'
29940 5' -59.4 NC_006273.1 + 33416 0.67 0.842108
Target:  5'- cACCGCC-UCGgGcGUCGGCGGCGc-GCg -3'
miRNA:   3'- -UGGUGGcAGCgU-CGGCUGCCGCuaCG- -5'
29940 5' -59.4 NC_006273.1 + 34246 0.66 0.864281
Target:  5'- gGCCGCCGgcaggcaGCGGCCGAUGaGUuc-GCg -3'
miRNA:   3'- -UGGUGGCag-----CGUCGGCUGC-CGcuaCG- -5'
29940 5' -59.4 NC_006273.1 + 34386 0.75 0.375635
Target:  5'- cGCCACCGUUGaC-GUgGGCGGCGAUGa -3'
miRNA:   3'- -UGGUGGCAGC-GuCGgCUGCCGCUACg -5'
29940 5' -59.4 NC_006273.1 + 36489 0.67 0.810195
Target:  5'- uGCUguuuuCCGU-GUuGCCGACGGCGgcGCg -3'
miRNA:   3'- -UGGu----GGCAgCGuCGGCUGCCGCuaCG- -5'
29940 5' -59.4 NC_006273.1 + 37208 0.71 0.635371
Target:  5'- gUUugCGaCGCGGCCGACGcGCG-UGCc -3'
miRNA:   3'- uGGugGCaGCGUCGGCUGC-CGCuACG- -5'
29940 5' -59.4 NC_006273.1 + 37284 0.7 0.683509
Target:  5'- gGCCGCCGa-GCAGCCcuugcGACGGCcggacAUGCc -3'
miRNA:   3'- -UGGUGGCagCGUCGG-----CUGCCGc----UACG- -5'
29940 5' -59.4 NC_006273.1 + 38083 0.82 0.159377
Target:  5'- aGCCGCCG-CGCGGCCucGGCGGCGG-GCg -3'
miRNA:   3'- -UGGUGGCaGCGUCGG--CUGCCGCUaCG- -5'
29940 5' -59.4 NC_006273.1 + 38340 0.7 0.645031
Target:  5'- cGCCGCCGUCGCGuccgccCCGACcaccGCG-UGCg -3'
miRNA:   3'- -UGGUGGCAGCGUc-----GGCUGc---CGCuACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.