miRNA display CGI


Results 1 - 20 of 309 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29940 5' -59.4 NC_006273.1 + 234832 0.66 0.88478
Target:  5'- aGCC-CUGUccCGCA-CCGGCGGCGGUc- -3'
miRNA:   3'- -UGGuGGCA--GCGUcGGCUGCCGCUAcg -5'
29940 5' -59.4 NC_006273.1 + 233953 0.7 0.664317
Target:  5'- cCCACCGUCGgguCGGCCG-CGGgGuccaccucGUGCa -3'
miRNA:   3'- uGGUGGCAGC---GUCGGCuGCCgC--------UACG- -5'
29940 5' -59.4 NC_006273.1 + 233679 0.68 0.767124
Target:  5'- cGCCACCGcCGCGGCgGAuuucCGcGCGggGg -3'
miRNA:   3'- -UGGUGGCaGCGUCGgCU----GC-CGCuaCg -5'
29940 5' -59.4 NC_006273.1 + 233640 0.72 0.539681
Target:  5'- uGCCACCGUCGU-GCCGGCccaccgccGGCGcaGCu -3'
miRNA:   3'- -UGGUGGCAGCGuCGGCUG--------CCGCuaCG- -5'
29940 5' -59.4 NC_006273.1 + 233524 0.69 0.739937
Target:  5'- cACgGCCGUaGCAG-CGACGcGgGGUGCg -3'
miRNA:   3'- -UGgUGGCAgCGUCgGCUGC-CgCUACG- -5'
29940 5' -59.4 NC_006273.1 + 233393 0.7 0.673928
Target:  5'- uCCguGCCGcUCGCcGCUGGCGGCGAcGUc -3'
miRNA:   3'- uGG--UGGC-AGCGuCGGCUGCCGCUaCG- -5'
29940 5' -59.4 NC_006273.1 + 233233 0.7 0.645031
Target:  5'- cGCCGCCGUCGCGuccgccCCGACcaccGCG-UGCg -3'
miRNA:   3'- -UGGUGGCAGCGUc-----GGCUGc---CGCuACG- -5'
29940 5' -59.4 NC_006273.1 + 232976 0.82 0.159377
Target:  5'- aGCCGCCG-CGCGGCCucGGCGGCGG-GCg -3'
miRNA:   3'- -UGGUGGCaGCGUCGG--CUGCCGCUaCG- -5'
29940 5' -59.4 NC_006273.1 + 232720 0.67 0.852655
Target:  5'- aACCACCGUgGCcaaguccagucccagAGCuugagCGuCGGCGcgGCg -3'
miRNA:   3'- -UGGUGGCAgCG---------------UCG-----GCuGCCGCuaCG- -5'
29940 5' -59.4 NC_006273.1 + 230461 0.67 0.826466
Target:  5'- -gCGCC-UCGgGGCgaugCGACGGCGAUGa -3'
miRNA:   3'- ugGUGGcAGCgUCG----GCUGCCGCUACg -5'
29940 5' -59.4 NC_006273.1 + 227824 0.68 0.800997
Target:  5'- gUC-CCGUCucccucuGUGGUCGugGGUGGUGCg -3'
miRNA:   3'- uGGuGGCAG-------CGUCGGCugCCGCUACG- -5'
29940 5' -59.4 NC_006273.1 + 227683 0.67 0.834369
Target:  5'- uACCGCCccgaaUUGCGGCaucgucaacaaCGACGGCGcgGUc -3'
miRNA:   3'- -UGGUGGc----AGCGUCG-----------GCUGCCGCuaCG- -5'
29940 5' -59.4 NC_006273.1 + 219659 0.66 0.85707
Target:  5'- cGCCAgCGUCGCcaAGCCGAUugaGGCa---- -3'
miRNA:   3'- -UGGUgGCAGCG--UCGGCUG---CCGcuacg -5'
29940 5' -59.4 NC_006273.1 + 218715 0.68 0.775982
Target:  5'- aACCACCGgCGCgguaggAGCCcACGGCGcccaGCa -3'
miRNA:   3'- -UGGUGGCaGCG------UCGGcUGCCGCua--CG- -5'
29940 5' -59.4 NC_006273.1 + 218605 0.66 0.88478
Target:  5'- uUCACCGgcuagaCGCuGCaggGGCGGCGA-GCg -3'
miRNA:   3'- uGGUGGCa-----GCGuCGg--CUGCCGCUaCG- -5'
29940 5' -59.4 NC_006273.1 + 218507 0.73 0.521037
Target:  5'- gGCCGCgCGcCGCAGaCCGuguucguaGCGGCGAcGCa -3'
miRNA:   3'- -UGGUG-GCaGCGUC-GGC--------UGCCGCUaCG- -5'
29940 5' -59.4 NC_006273.1 + 218261 0.67 0.849677
Target:  5'- uUCuCCGUcucccagggaaCGCGGUCGACGGCGuuccGCg -3'
miRNA:   3'- uGGuGGCA-----------GCGUCGGCUGCCGCua--CG- -5'
29940 5' -59.4 NC_006273.1 + 218183 0.7 0.690194
Target:  5'- gUCGUCGUCGCguggcaugggcggcGGCCGACGGCGGacgaccgGCa -3'
miRNA:   3'- uGGUGGCAGCG--------------UCGGCUGCCGCUa------CG- -5'
29940 5' -59.4 NC_006273.1 + 217966 0.69 0.701603
Target:  5'- cCCACuCGUCGUcaucgcucucguGGCCGGCGGCcauacgcGcgGCa -3'
miRNA:   3'- uGGUG-GCAGCG------------UCGGCUGCCG-------CuaCG- -5'
29940 5' -59.4 NC_006273.1 + 216982 0.71 0.62571
Target:  5'- gGCCACgGcCGCAGCgucaGugGGguCGGUGCa -3'
miRNA:   3'- -UGGUGgCaGCGUCGg---CugCC--GCUACG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.