miRNA display CGI


Results 1 - 20 of 309 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29940 5' -59.4 NC_006273.1 + 204706 0.74 0.4703
Target:  5'- aGCCGCCGgcacCGCGGCCGGCcgcaggaagccgcccGGCGcgucgucuguGUGCg -3'
miRNA:   3'- -UGGUGGCa---GCGUCGGCUG---------------CCGC----------UACG- -5'
29940 5' -59.4 NC_006273.1 + 142802 0.75 0.399286
Target:  5'- aGCCGCCGUCGCuGGUgGGCacgGGCG-UGCa -3'
miRNA:   3'- -UGGUGGCAGCG-UCGgCUG---CCGCuACG- -5'
29940 5' -59.4 NC_006273.1 + 202860 0.75 0.407378
Target:  5'- uCCACCGUcaauuaCGCAGCUGACGGUG-UGa -3'
miRNA:   3'- uGGUGGCA------GCGUCGGCUGCCGCuACg -5'
29940 5' -59.4 NC_006273.1 + 59592 0.75 0.414749
Target:  5'- uGCCuACUGUUcucgauaGCGGCCGucaacgccACGGCGAUGCg -3'
miRNA:   3'- -UGG-UGGCAG-------CGUCGGC--------UGCCGCUACG- -5'
29940 5' -59.4 NC_006273.1 + 167165 0.75 0.415573
Target:  5'- uGCCGCCGUUgGUGGCC-ACGGCGG-GCg -3'
miRNA:   3'- -UGGUGGCAG-CGUCGGcUGCCGCUaCG- -5'
29940 5' -59.4 NC_006273.1 + 65548 0.74 0.423868
Target:  5'- uACCACCGUCcuaCAGCUG-CGGCGAagggGCc -3'
miRNA:   3'- -UGGUGGCAGc--GUCGGCuGCCGCUa---CG- -5'
29940 5' -59.4 NC_006273.1 + 68810 0.74 0.449333
Target:  5'- -aC-CCGgacgCGUAGCCGGCGGCGccGCg -3'
miRNA:   3'- ugGuGGCa---GCGUCGGCUGCCGCuaCG- -5'
29940 5' -59.4 NC_006273.1 + 197303 0.74 0.449333
Target:  5'- cCCGCCGcCGaGGCCGcGCGGCGGcUGCu -3'
miRNA:   3'- uGGUGGCaGCgUCGGC-UGCCGCU-ACG- -5'
29940 5' -59.4 NC_006273.1 + 156691 0.74 0.458007
Target:  5'- --aACCG-CGCcuCCGGCGGCGGUGCc -3'
miRNA:   3'- uggUGGCaGCGucGGCUGCCGCUACG- -5'
29940 5' -59.4 NC_006273.1 + 163845 0.75 0.391297
Target:  5'- gUCGCCGgcaGCGGCCGcCGGCGAggGCc -3'
miRNA:   3'- uGGUGGCag-CGUCGGCuGCCGCUa-CG- -5'
29940 5' -59.4 NC_006273.1 + 116578 0.75 0.391297
Target:  5'- cACgGCCGUUGUAGgacaCGuuGCGGCGAUGCa -3'
miRNA:   3'- -UGgUGGCAGCGUCg---GC--UGCCGCUACG- -5'
29940 5' -59.4 NC_006273.1 + 72303 0.75 0.383413
Target:  5'- gGCCGCCG-CGCAGC--GCGGCGcugaGUGCa -3'
miRNA:   3'- -UGGUGGCaGCGUCGgcUGCCGC----UACG- -5'
29940 5' -59.4 NC_006273.1 + 232976 0.82 0.159377
Target:  5'- aGCCGCCG-CGCGGCCucGGCGGCGG-GCg -3'
miRNA:   3'- -UGGUGGCaGCGUCGG--CUGCCGCUaCG- -5'
29940 5' -59.4 NC_006273.1 + 185404 0.81 0.179611
Target:  5'- cUCGCCGUCGCGGCCGAC-GUGGUGg -3'
miRNA:   3'- uGGUGGCAGCGUCGGCUGcCGCUACg -5'
29940 5' -59.4 NC_006273.1 + 196749 0.78 0.260208
Target:  5'- cGCCGCaccccgCGUCGCuGCUGACGGCcGUGCg -3'
miRNA:   3'- -UGGUG------GCAGCGuCGGCUGCCGcUACG- -5'
29940 5' -59.4 NC_006273.1 + 20120 0.77 0.290846
Target:  5'- uCCACCaUCGCAGCCGGCaGagGAUGCa -3'
miRNA:   3'- uGGUGGcAGCGUCGGCUGcCg-CUACG- -5'
29940 5' -59.4 NC_006273.1 + 87603 0.76 0.33125
Target:  5'- cGCCGuCCGUCGCcGCUGuuGCGGCGGUaGCu -3'
miRNA:   3'- -UGGU-GGCAGCGuCGGC--UGCCGCUA-CG- -5'
29940 5' -59.4 NC_006273.1 + 38395 0.76 0.352949
Target:  5'- cGCCGuCCGUCGCcGCCGcuGCGGUGGcgGCa -3'
miRNA:   3'- -UGGU-GGCAGCGuCGGC--UGCCGCUa-CG- -5'
29940 5' -59.4 NC_006273.1 + 30859 0.76 0.360403
Target:  5'- cGCCaggugaGCCGUcCGCuGCCGAgGGCGAUGa -3'
miRNA:   3'- -UGG------UGGCA-GCGuCGGCUgCCGCUACg -5'
29940 5' -59.4 NC_006273.1 + 117344 0.76 0.367965
Target:  5'- cACCGCCGUCGCuuucucccucggAGCCGGCagaGGCGgcGUc -3'
miRNA:   3'- -UGGUGGCAGCG------------UCGGCUG---CCGCuaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.